BAC Information

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BAC

Clone NameMSMg01-132B05
Chromosome11 (Build37)
Map Location 34,265,017 - 34,417,869
singlet/doubletdoublet
Overlap geneDock2, EG574403
Upstream geneRanbp17, Anp32c, LOC669306, LOC666269, Gabrp, D130052B06Rik, Kcnip1, Kcnmb1, Lcp2, Foxi1
Downstream geneDock2, Ccdc99, LOC100038976, Slit3, LOC100039006
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132B05.T7 (MSMg01no132_b05.b1)MSMg01-132B05.TJ (MSMg01no132_b05.g1)
ACCAG339411AG339412
length710703
length of high quality
(start - end)
422 (69 - 490)293 (68 - 360)
definitionCHROMAT_FILE: MSMg01no132_b05.b1 PHD_FILE: MSMg01no132_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:29 2005CHROMAT_FILE: MSMg01no132_b05.g1 PHD_FILE: MSMg01no132_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,265,017 - 34,265,438)(34,417,577 - 34,417,869)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGAGCGCGGAATTC
TCTAAGGTGCCACAGATCGCTTAGCCCACAAAATGTCTCTTCCTAGCTGG
CATCTTGTCTGGCAAAGCCCAACAGGGGGAAAAAAACCAAAAAACAATAA
ACCCCAAACACTTGCTAGTCAAGCTTCCAGCACACAGGCTGCATAACATT
CATACACATAGTCCACATTCTTTGCATGCTGTTTCTTATTAACTATGTGC
ATATCCATCACCCGACCAGTGCTCCTGATGTCCACTGATCATAGGGGAAA
AGAATGACTCATGAACCTGCTTAGCTATGTATGTCTAGGCTCACAAGAGT
AATGACTATGGATAACATTGGAGTTTCAGGCCAAAAGTTCTCTCTCTGTC
TCTCTCTCTGTCTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTC
TGTCTCTCTCTCTGTATGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGGTAGTGTTATACAAACACAAATGCGTTGTT
GCCAGTATCAGCCTCAGTGCCGTGTATAAAAGCCACAGTTCTCGACTCAA
CTAAAACATTCTGAGTGTTTGTCCTTTGCTATTATGAAAATGATACTGAT
AACCTATCGGATAAATAGAAAATATATACAGGGCCTATGACACCGATCAC
CAACGGTTTA
TGAAGTGGGAGCCTGGCGGCGCCTGGTTCCAACAAGAGGTGAACTATAGA
AGGTTCCGAAAAATCGCTCTGTAGACCAGGTTGGCCTCGAACTCGGAAAT
CTACTTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCAC
TGCCCTGCAAAAAGTAGATTTTTGTTTTTACCAGTATATGGAAGAATACA
ACTCTACCTTAAAGCCATTTCCAGGAAGTAGATTTCTATTTCCTTTCTTC
TAGTCTGTAACAAGGTCATCCATCCTAGATGTTGCCTACATTGATACATG
TCACTCTACAACCCTGTTGAAAGCCAGTCAGGTACAGCACTTGTTTCTAT
CCCTGACTTGACTGCGCCACATAGATACTTCACTTTGATATGTGTAAAAG
GAGCAGCTGACAGTCCCATTGTGGCAAGGGCCCCAACTCTTTGTGTCATA
GGATTAGCATCTTCTGCCTTAGCGTTTATGTTTATACTCCCATAGCATAG
GAAGAGAATGCTGAGCACTGGTTCAAGCAATGAGTGCATCGTGCAACCCC
GAGTGAACCATGCCTCTTGATGGCGAAAACAAAAATCAGCGTTCTGCAAA
GCGAGTGTTCAGGTGGAAGCCTTTGGCTTGTGCTGAAAGTCCTTCATCCT
TTCCATCTCAGCGAAGGCGGTTCTGAGCCACTTTTCTGCTCTGGCCCTTA
CCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_b05.b1 MSMg01no132_b05.b1 CHROMAT_FILE:
MSMg01no132_b05.b1 PHD_FILE: MSMg01no132_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:29 2005
         (422 letters)



>mm_chr11_34264817_34265638
          Length = 822

 Score =  754 bits (390), Expect = 0.0
 Identities = 414/422 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcttagcccacaaaatgtctcttcctagctggcatcttgtctggcaaagcccaacagggg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 201 gcttagcccacaaaatgtctcttcctagctggcatcttgtctggcaaagggcaacagggg 260

                                                                       
Query: 61  gaaaaaaaccaaaaaacaataaaccccaaacacttgctagtcaagcttccagcacacagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaaaaaccaaaaaacaataaaccccaaacacttgctagtcaagcttccagcacacagg 320

                                                                       
Query: 121 ctgcataacattcatacacatagtccacattctttgcatgctgtttcttattaactatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcataacattcatacacatagtccacattctttgcatgctgtttcttattaactatgt 380

                                                                       
Query: 181 gcatatccatcacccgaccagtgctcctgatgtccactgatcataggggaaaagaatgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatatccatcacccgaccagtgctcctgatgtccactgatcataggggaaaagaatgac 440

                                                                       
Query: 241 tcatgaacctgcttagctatgtatgtctaggctcacaagagtaatgactatggataacat 300
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatgaacctgcagagctatgtatgtctaggctcacaagagtaatgactatggataacat 500

                                                                       
Query: 301 tggagtttcaggccaaaagttctctctctgtctctctctctgtctctctctctgtctctc 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggggtttcaggccaaaagttctctctctgtctctctctctgtctctctctctgtctctc 560

                                                                       
Query: 361 tctgtctctctctgtctctctctgtctctctctctgtatgtgtgtgtgtgtgtgtgtgtg 420
           ||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct: 561 tctgtctctctctgtctctctctgtctctctctctctctctgtgtgtgtgtgtgtgtgtg 620

             
Query: 421 tg 422
           ||
Sbjct: 621 tg 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no132_b05.g1 MSMg01no132_b05.g1 CHROMAT_FILE:
MSMg01no132_b05.g1 PHD_FILE: MSMg01no132_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:29 2005
         (293 letters)



>mm_chr11_34417286_34417978
          Length = 693

 Score =  489 bits (253), Expect = e-143
 Identities = 283/293 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtagaccaggttggcctcgaactcggaaatctacttgcctctgcctcccaagtgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 584 tctgtagaccaggttggcctcgaactcggaaatctacttgcctctgcttcccaagtactg 525

                                                                       
Query: 61  ggattaaaggtgtgtgccaccactgccctgcaaaaagtagatttttgtttttaccagtat 120
           |||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 524 ggattaaaggcgtgtgccaccaccgccctgcaaaaagtagatttttatttttaccagtat 465

                                                                       
Query: 121 atggaagaatacaactctaccttaaagccatttccaggaagtagatttctatttcctttc 180
           |||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 464 atggaagaatacgactctacctcaaagccatttccaggaagtagattcctatttcctttc 405

                                                                       
Query: 181 ttctagtctgtaacaaggtcatccatcctagatgttgcctacattgatacatgtcactct 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttctcgtctgtaacaaggtcatccatcctagatgttgcctacattgatacatgtcactct 345

                                                                
Query: 241 acaaccctgttgaaagccagtcaggtacagcacttgtttctatccctgacttg 293
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 acaaccctggtgaaagccagtcaggtacagcacttgtttctatccctgacttg 292


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)