BAC Information

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BAC

Clone NameMSMg01-132E21
Chromosome11 (Build37)
Map Location 35,090,949 - 35,122,554
singlet/doubletdoublet
Overlap geneSlit3
Upstream geneFoxi1, Dock2, EG574403, Dock2, Ccdc99, LOC100038976
Downstream geneLOC100039006, Pank3, LOC666733, AI595406, Rars, Wwc1, LOC636532, Odz2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132E21.T7 (MSMg01no132_e21.b1)MSMg01-132E21.TJ (MSMg01no132_e21.g1)
ACCAG339584AG339585
length733733
length of high quality
(start - end)		690 (44 - 733)665 (69 - 733)
definitionCHROMAT_FILE: MSMg01no132_e21.b1 PHD_FILE: MSMg01no132_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:47 2005CHROMAT_FILE: MSMg01no132_e21.g1 PHD_FILE: MSMg01no132_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,090,949 - 35,091,634)(35,121,890 - 35,122,554)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAATCCGCGGAA
TTCCTGCCACACACTTCGCTTTCTCCAGGAATGAGCATCCAAGCCTGGCA
CTTAATGACACTGATCTGGACAGTTTGATATGGTAGGGCCTTTTCTTCTG
AGCCTTTTGTCTTCTGTCCCCTTTATTATTATTATTTCTTTTAACCATGT
TCTACTTCAGCCTCCCTGTTGTAAACTAGCTCTCTCACACACATACACCC
ATGTATGCTCACACATCTAACTGCTGATATAGACAGAGGTGAAGATCATA
CTATAGTAATCTTCTGTGGGTCTGAGCATGGGCCACAGTGTCAGACTGAG
TTTACACTGTAGCTATACAAGTTGCTATCCACATAACCTTGACATAGGTT
CTTAACCTCTGTAAAGCCCGGGGATATACTAATGCAGACTGTATATCCTC
CGTAAGAAAACACTGGACTCTCACATTATTGGTGCTGGGTGTGGCACAAC
AGCATGCTGATACTCCATTGGAGCTTGGGAACTGGTGTTGTGGTTGATGA
TGCCATGCTATTATGGAAGACCCCAAAGCAAAGAGGCGGGCAGATAAGCG
GCTCACAGAGGAACGAGGACTGCAGGACTAGGCCTGTGCTCTTCTCCTCT
TTATAACATTTCTATCTCTTCAGTTTCTTCCCTGGGCCAGATGGGCTTCG
TGTAAAAATGAGAGAGGTGTCCTCAGGCAGCTT

GCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTCTGTAGAACAGGCTGTGCTCCAGCTCACA
GAGATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGTGCC
ACCACCACCTGGTGAGTTATATTTGTTTTGACAAATGTCAACTTAATATT
GATGACTTGGACTCACCCTGAATCCCACAGATGCTTAAATGCAGTGCTTT
CCTTTAAGGAATAGAGGAAATGCTGTCACCGAGTAAGAAAAGAGCTGTGG
ACAGGGTGCCAAGGAGCAATAAGACCTATGGTGAACTCCACAGAAGGGAA
CTCAGAACAGCTTAACATGTCACACCAACATCACTACTGAGTCCCTGATG
GTGTCATCTACAGGACAAAGCCAGGGCACAAGTGTGAGGCACAATGACTG
TCACATTCTACTTCCTATACTCTGGAATTATGACCTGGGGGAAAATCACT
CTGAGGACATACAATCCAGTGTGGGTGGGGGAAAGCTGACTCTTCATGGT
GAGTTTCAAAAGGAAGTATTCAGGAGATTCACTTCCTTAGGCTCAGTCCT
TTCTTGCTCTAGGGAGTTCCTTCATGTTAGAGGGACTCTATGTCTTTAAG
TCTGGGGCCTCTGTAGGCCATGACTACAGGCCAAGATGTGAGGGTCTGCA
CCATCTTCCAAAGCCAGGCTGCAACTGTTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_e21.b1 MSMg01no132_e21.b1 CHROMAT_FILE:
MSMg01no132_e21.b1 PHD_FILE: MSMg01no132_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:47 2005
         (690 letters)



>mm_chr11_35090745_35091834
          Length = 1090

 Score = 1241 bits (642), Expect = 0.0
 Identities = 675/686 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgccacacacttcgctttctccaggaatgagcatccaagcctggcacttaatg 64
           ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgccacacacttggctttctccgggaatgagcatccaagcctggcacttaatg 264

                                                                       
Query: 65  acactgatctggacagtttgatatggtagggccttttcttctgagccttttgtcttctgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acactgatctggacagtttgatatggtagggccttttcttctgagccttttgtcttctgt 324

                                                                       
Query: 125 cccctttattattattatttcttttaaccatgttctacttcagcctccctgttgtaaact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cccctttattattattatttcttttaaccatgttctacttcagcctccctgttgtaaact 384

                                                                       
Query: 185 agctctctcacacacatacacccatgtatgctcacacatctaactgctgatatagacaga 244
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agctctctcacacacatacacgcatgtatgctcacacatctaactgctgatatagacaga 444

                                                                       
Query: 245 ggtgaagatcatactatagtaatcttctgtgggtctgagcatgggccacagtgtcagact 304
           | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 445 gatgaagatcatactatagtaatcttgtgtgggtctgagcatgggccacagtgtcagact 504

                                                                       
Query: 305 gagtttacactgtagctatacaagttgctatccacataaccttgacataggttcttaacc 364
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 505 gagtttacactgtagctatacaagttgctatccacataaccttgacagaggttcttaacc 564

                                                                       
Query: 365 tctgtaaagcccggggatatactaatgcagactgtatatcctccgtaagaaaacactgga 424
           ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 565 tctgtaaggcccggggatatactaatgcagactgtatatcctccgtaacaaaacactgga 624

                                                                       
Query: 425 ctctcacattattggtgctgggtgtggcacaacagcatgctgatactccattggagcttg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctctcacattattggtgctgggtgtggcacaacagcatgctgatactccattggagcttg 684

                                                                       
Query: 485 ggaactggtgttgtggttgatgatgccatgctattatggaagaccccaaagcaaagaggc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggaactggtgttgtggttgatgatgccatgctattatggaagaccccaaagcaaagaggc 744

                                                                       
Query: 545 gggcagataagcggctcacagaggaacgaggactgcaggactaggcctgtgctcttctcc 604
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 745 gggcagataagcggctcacagaggaatgaggactgcaggactaggcctgtgctcttctcc 804

                                                                       
Query: 605 tctttataacatttctatctcttcagtttcttccctgggccagatgggcttcgtgtaaaa 664
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 805 tctttataacgtttctatctcttcagtttcttccctgggccagatgggcttcgtgtcaaa 864

                                     
Query: 665 atgagagaggtgtcctcaggcagctt 690
           ||||||||||||||||||||||||||
Sbjct: 865 atgagagaggtgtcctcaggcagctt 890


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no132_e21.g1 MSMg01no132_e21.g1 CHROMAT_FILE:
MSMg01no132_e21.g1 PHD_FILE: MSMg01no132_e21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:47 2005
         (665 letters)



>mm_chr11_35121596_35122660
          Length = 1065

 Score = 1263 bits (653), Expect = 0.0
 Identities = 662/665 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtagaacaggctgtgctccagctcacagagatctgcctgcctctgcctcccgagt 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 959 actctgtagaacaggctgtgctccaactcacagagatctgcctgcctctgcctcccgagt 900

                                                                       
Query: 61  gctgggattaaaggtgtgtgccaccaccacctggtgagttatatttgttttgacaaatgt 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 gctgggattaaaggcgtgtgccaccaccacctggtgagttatatttgttttgacaaatgt 840

                                                                       
Query: 121 caacttaatattgatgacttggactcaccctgaatcccacagatgcttaaatgcagtgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 caacttaatattgatgacttggactcaccctgaatcccacagatgcttaaatgcagtgct 780

                                                                       
Query: 181 ttcctttaaggaatagaggaaatgctgtcaccgagtaagaaaagagctgtggacagggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 ttcctttaaggaatagaggaaatgctgtcaccgagtaagaaaagagctgtggacagggtg 720

                                                                       
Query: 241 ccaaggagcaataagacctatggtgaactccacagaagggaactcagaacagcttaacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ccaaggagcaataagacctatggtgaactccacagaagggaactcagaacagcttaacat 660

                                                                       
Query: 301 gtcacaccaacatcactactgagtccctgatggtgtcatctacaggacaaagccagggca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gtcacaccaacatcactactgagtccctgatggtgtcatctacaggacaaagccagggca 600

                                                                       
Query: 361 caagtgtgaggcacaatgactgtcacattctacttcctatactctggaattatgacctgg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 599 caagtgtgaggcacaatgactgtcacattctacttcctatactctggaattatggcctgg 540

                                                                       
Query: 421 gggaaaatcactctgaggacatacaatccagtgtgggtgggggaaagctgactcttcatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gggaaaatcactctgaggacatacaatccagtgtgggtgggggaaagctgactcttcatg 480

                                                                       
Query: 481 gtgagtttcaaaaggaagtattcaggagattcacttccttaggctcagtcctttcttgct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gtgagtttcaaaaggaagtattcaggagattcacttccttaggctcagtcctttcttgct 420

                                                                       
Query: 541 ctagggagttccttcatgttagagggactctatgtctttaagtctggggcctctgtaggc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ctagggagttccttcatgttagagggactctatgtctttaagtctggggcctctgtaggc 360

                                                                       
Query: 601 catgactacaggccaagatgtgagggtctgcaccatcttccaaagccaggctgcaactgt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 catgactacaggccaagatgtgagggtctgcaccatcttccaaagccaggctgcaactgt 300

                
Query: 661 ttatg 665
           |||||
Sbjct: 299 ttatg 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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