Query= MSMg01no132_k23.b1 MSMg01no132_k23.b1 CHROMAT_FILE:
MSMg01no132_k23.b1 PHD_FILE: MSMg01no132_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:16 2005
(554 letters)
>mm_chr11_119773329_119774285
Length = 957
Score = 992 bits (513), Expect = 0.0
Identities = 545/561 (97%), Gaps = 11/561 (1%)
Strand = Plus / Plus
Query: 1 gcagagaactaggaagaatgtgtggaagcgcttccagagtgttatggtacaaacagaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 gcagagaactaggaagaatgtgtggaagcgcttccagagtgttatggtagaaacagaacc 260
Query: 61 ctccctgggcaataaatacccctagctaaatggctgcagccagcaaggcactgggtactg 120
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ctccctgggcaataaatactcctagctaaatggttgcagccagcaaggcactgggtactg 320
Query: 121 tgggctgttgcttgacagactgggcctcagttagtgactctgggatgtcagggcatccta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggctgttgcttgacagactgggcctcagttagtgactctgggatgtcagggcatccta 380
Query: 181 gcacggagtagacaagagtggacagagaaagtgggtgatttcaaggccatcttggtctgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcacggagtagacaagagtggacagagaaagtgggtgatttcaaggccatcttggtctgc 440
Query: 241 atagcaagtctttt----accagccagaga---cctggacctgcacaagacctctgtccc 293
|||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 atagcaagtc----ccaaaccagccagagataccctggacctgcacaagacctctgtccc 496
Query: 294 acacccctgaacatgcccttggttagggcatgagaaccacacaggtgggaagctccagcc 353
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 497 acacccctgaacatgcccttggttagggcatgagaaccacacaggtcggaagctccagcc 556
Query: 354 ttctagtaagttctgccccagtactgccctttatagtcatgttgaccacagggacagggt 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttctagtaagttctgccccagtactgccctttatagtcatgttgaccacagggacagggt 616
Query: 414 accattactgcgattttatggggccagttggcccacaaagcattggagactaagatatga 473
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 617 accattactgcgattttatggggccagttggcccacagagcattggagactaagatatga 676
Query: 474 cagctaaccatcaaagtcagtggctgagcccgattagggcagctgactgtacagagaacc 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cagctaaccatcaaagtcagtggctgagcccgattagggcagctgactgtacagagaacc 736
Query: 534 ctgggataaagggttcctggc 554
|||||||||||||||||||||
Sbjct: 737 ctgggataaagggttcctggc 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 957
Length adjustment: 10
Effective length of query: 544
Effective length of database: 947
Effective search space: 515168
Effective search space used: 515168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_k23.g1 MSMg01no132_k23.g1 CHROMAT_FILE:
MSMg01no132_k23.g1 PHD_FILE: MSMg01no132_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:16 2005
(528 letters)
>mm_chr11_119947883_119948810
Length = 928
Score = 855 bits (442), Expect = 0.0
Identities = 501/552 (90%), Gaps = 49/552 (8%)
Strand = Plus / Minus
Query: 26 cgaggacagcctgggctacgtgccatatgagatgctttcttagtgcaaaagtggctgagg 85
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 928 cgaggacagcctgggctacgtggtatatgagatgctttcttagtgcaaaagtggctgagg 869
Query: 86 ttcaatggcagagtccttatttagcacatgcaaggccctggaccaccatcctaactt--- 142
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 ttcaatggcagagtccttatttagcacatgcaaggccctggaccaccatcctaacttacc 809
Query: 143 --------------acacacacacacacacacacacacacacacg--------------- 173
|||||||||||||||||||||||||||||||
Sbjct: 808 acacacacacacacacacacacacacacacacacacacacacacgcacgcacgcacacac 749
Query: 174 -----------------cacgcgcttgttcataagattaatatgcggataatttttaaag 216
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gcactcacacgcacgcacacgcgcttgttcataagattaatatgcggataatttttaaag 689
Query: 217 catttgagtttataacattgttatttaatgtaacttctgttggagaggccatctgagctt 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 catttgagtttataacattgttatttaatgtaacttctgttggagaggccatctgagctt 629
Query: 277 gtgggtcccgagccctttggcagacaggaaagaccacatctatacacttggagactccga 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gtgggtcccgagccctttggcagacaggaaagaccacatctatacacttggagactccga 569
Query: 337 cagtgtctttgaaagcagttaggaaagattggggataggaggcatcattgcgcggtcctg 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cagtgtctttgaaagcagttaggaaagattggggataggaggcatcattgcgcggtcctg 509
Query: 397 ccaaggcaccggagaggcccagggctgcgcgggggcctcagagggtgccgggacccgcag 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ccaaggcaccggagaggcccagggctgcgcgggggcctcagagggtgccgggacccgcag 449
Query: 457 gctccgcctccttaaagccccgcccctctgcctgccccactccactttggctttcggcag 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gctccgcctccttaaagccccgcccctctgcctgccccactccactttggctttcggcag 389
Query: 517 ctcctcccactc 528
||||||||||||
Sbjct: 388 ctcctcccactc 377
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
