BAC Information

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BAC

Clone NameMSMg01-134G15
Chromosome11 (Build37)
Map Location 51,502,322 - 51,503,094
singlet/doubletsinglet
Overlap genenone
Upstream geneAdamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik
Downstream geneSec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134G15.T7 (MSMg01no134_g15.b1)MSMg01-134G15.TJ (MSMg01no134_g15.g1)
ACCAG341135AG341136
length1,2011,218
length of high quality
(start - end)		773 (89 - 861)566 (91 - 656)
definitionCHROMAT_FILE: MSMg01no134_g15.b1 PHD_FILE: MSMg01no134_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:47 2005CHROMAT_FILE: MSMg01no134_g15.g1 PHD_FILE: MSMg01no134_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCGCTCTTTTTTNTACAATGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCCTGCTGCCTGGAATACCGTAAATTAACTCCATTCCTC
TAAGCTTATTCTTTCAGAACCATCCAAGCATGAAGGTCGGACCCCAGCCA
CTGGGGAAAAGACACCATGATTTTGATCCTGAAACACCTTTTTTACAAAT
AGAACGTGCCTTGTAGAGCTACTTCGCTTTGTTTATGTTTCTAGCAAACA
CAAAACGAAAGCAGAAATGCCAAACTTTATCTTTAGTCACTCTGTGGCCC
CAGAGAGAAGTCAATGATTTTTAGCCAAAGTAGCTTCTAAATGTCTGTTT
AAGGGAAGAAGGAATTCAGGACGCCAACGCTAGATAAGTCTCACTATAAT
AAACACATAAGGAAAACCTGTGAACAATGCAGACATACACTTGCAAGAGC
AGAGTCCTTGATGATTAACAGCACCTAACACCAGTGATTTGCGCCCTAAA
CCACCCTCCCATTACGCATTTCCGCCCACGCATACGGCCAGCACCGTCTG
GACACAAGCGCCCGGTGCTGCAACCTCCATTTTGCTTTCTGGCATTTTTG
TAGTTAAAAGCTCCGCCTCACTTGGCAGTCTGGTCCACATCTCCCGCCAG
GCTTCCGGTCTCTACACCTCCAGGCGAACGTCAGTGAAAACATAAGCAAG
TACGCGTGCGGTGAAGGCAAGGATTGCTCTAAGAGCCAGAGGAGGCCCGC
AGGGACCCCGACGTCCCACGAGGCCTTGACCCAAGATGGCGGACAAAACA
CTTAGCGCAGCCTTGCTCAGAGACGCATGTGCGCATGCCCGGTCGACCGA
GCTGCCCTGATCCAAGATGGCGGCCGGACCGGGGTTGGGGACGGGCTTAA
CGCGTTACTGAGCATGCTCAGTCTTCCGTCACTTGGGTCAAGACGGCAAG
CCGGCGCAAGCCGCTCATTCCTTCCCGGGAAAGGGGGGAACATGTACCCT
TGCGCGAGGGAAAAGTCTCCGTCTATTCCGTGGGGGGGAAATAACCCCCC
CCGCGTGGGAAGTTTAAATGGTTGTTTATGGGNCCGCTGGAACCGGCTTT
TCCCCCTTGAAAACTGTTCTGCCCCCGGAACCCAAAGGAAAAGACCGGTC
TTAAGGGGAAGGAATTTTATAATTTGTTCAAAACACCCCCCCCTCCCCGT
G

NACCTTTTTTTTTTTATAGCATGGAGGCTGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAGGAGAGCCAGGACTGC
ACAGAGAAACCCTGTCGAACCATAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAGAGAGAAAGAAAGAGAGAAAGAAAGAAAGAGAGAG
AATCTTTTGAGAAAGGGTCTTTGATACCTACCCAGGACTGGCCTTGAACT
CCTTACATCACGAAGGACCTCTTTCTACCTTCTGTGTACTGAGATTACAG
GTGTGTGCACCATCACCTGGGGTCCTCCAGCAACTCATGCACTCCCCTCT
CCTCGCCCCCGTTTTTTTCCTTTCTTTTTCTGGCTTTTCAAGACAGGATT
TCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGG
CCTCGAATTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAA
AGGCGTGCGCCACCACGCCAGCTAGGCAGGGTTTTTTGTTTGTTTGTTTG
TTTTTTGTTTTTATGAGTACACTGTTGATGTCTTCAGACACACCAGAAGA
GGGCATCAGATTCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGG
GATTTGAACTCAGGACCTCTGGAAGAACAGTTGGTGCTCTTACCCGCTGA
GCCACCTCCCCAGCCCCCAGCTTCTTTTTTACTGCAGGTTTTCCTACAGC
CATTACGTGCTCCTTTTTTTGCCTCCTCCACCTTGTACAATCTAGCTTTG
TTTTCTTTACAGCCTTGGCTTGAAAACATGTGTTTTATGGTGTGATTTTG
TTTTTTTTGTCCTATTTTCGGCCTCCCAATTTTTTAAATAAAAAGCTTTA
TTGGGCTTCAGGAATTTTGTTTTCTTTGTTTACTGGTGAAATTATGGGTC
CCCTTAAAATGTTTGGGTAGTTGAAAAAAATTTCTTTGGTTTTATTAAAA
AAAAAAAGTTGTGTGTTTATAAACCTGGTTGAATATTTATTAATTTATTA
AATGGTGTGGTAATAAAGAGATATTATGTTTTTGTTGGTGAATCTGGGTA
ACTCCATTTATTTCGTGAATATATATTTTGTTGTTTTTTTAAAATATTTT
GGTGTATGTTCTCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_g15.b1 MSMg01no134_g15.b1 CHROMAT_FILE:
MSMg01no134_g15.b1 PHD_FILE: MSMg01no134_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:47 2005
         (773 letters)



>mm_chr11_51502122_51503294
          Length = 1173

 Score = 1410 bits (729), Expect = 0.0
 Identities = 762/773 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actccattcctctaagcttattctttcagaaccatccaagcatgaaggtcggaccccagc 60
           |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 973 actccattcctctaagcttattctttcagaactagccaagcatgaaggtcggaccccagc 914

                                                                       
Query: 61  cactggggaaaagacaccatgattttgatcctgaaacaccttttttacaaatagaacgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 cactggggaaaagacaccatgattttgatcctgaaacaccttttttacaaatagaacgtg 854

                                                                       
Query: 121 ccttgtagagctacttcgctttgtttatgtttctagcaaacacaaaacgaaagcagaaat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 853 ccttgtagagctacttcgctttgtttatgtttctagcaaacacaaaacgaaaacagaaat 794

                                                                       
Query: 181 gccaaactttatctttagtcactctgtggccccagagagaagtcaatgatttttagccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gccaaactttatctttagtcactctgtggccccagagagaagtcaatgatttttagccaa 734

                                                                       
Query: 241 agtagcttctaaatgtctgtttaagggaagaaggaattcaggacgccaacgctagataag 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 agtagcttcgaaatgtctgtttaagggaagaaggaattcaggacgccaacgctagataag 674

                                                                       
Query: 301 tctcactataataaacacataaggaaaacctgtgaacaatgcagacatacacttgcaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 673 tctcactataataaacacataaggaaaacctgtgaacaatgcagacatacacttgaaaga 614

                                                                       
Query: 361 gcagagtccttgatgattaacagcacctaacaccagtgatttgcgccctaaaccaccctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gcagagtccttgatgattaacagcacctaacaccagtgatttgcgccctaaaccaccctc 554

                                                                       
Query: 421 ccattacgcatttccgcccacgcatacggccagcaccgtctggacacaagcgcccggtgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ccattacgcatttccgcccacgcatacggccagcaccgtctggacacaagcgcccggtgc 494

                                                                       
Query: 481 tgcaacctccattttgctttctggcatttttgtagttaaaagctccgcctcacttggcag 540
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 493 tgcaacctccattttgctttctggcattcttgtagttaaaagctccgcctcacttggcag 434

                                                                       
Query: 541 tctggtccacatctcccgccaggcttccggtctctacacctccaggcgaacgtcagtgaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 433 tctggtccacatctcccgccaggcttccggtctctacacctccaggcgaacgtcagtgac 374

                                                                       
Query: 601 aacataagcaagtacgcgtgcggtgaaggcaaggattgctctaagagccagaggaggccc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aacataagcaagtacgcgtgcggtgaaggcaaggattgctctaagagccagaggaggccc 314

                                                                       
Query: 661 gcagggaccccgacgtcccacgaggccttgacccaagatggcggacaaaacacttagcgc 720
           || ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 313 gcggggaccccgacgtcccatgaggccttgacccaagatggcggacaaaacccttagcgc 254

                                                                
Query: 721 agccttgctcagagacgcatgtgcgcatgcccggtcgaccgagctgccctgat 773
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 253 agccttgctcagagacgcatgtgcgcatgcccggtcgactgagctgccctgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 773
Length of database: 1173
Length adjustment: 10
Effective length of query: 763
Effective length of database: 1163
Effective search space:   887369
Effective search space used:   887369
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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