Query= MSMg01no135_f08.b1 MSMg01no135_f08.b1 CHROMAT_FILE:
MSMg01no135_f08.b1 PHD_FILE: MSMg01no135_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:26 2005
(660 letters)
>mm_chr11_65946671_65947730
Length = 1060
Score = 1241 bits (642), Expect = 0.0
Identities = 654/660 (99%), Gaps = 5/660 (0%)
Strand = Plus / Minus
Query: 4 gaattcactattatac---cagcctggccttgatcctcctgcctctgtctcctcagtgcc 60
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 gaattcactat--tacaaacagcctggccttgatcctcctgcctctgtctcctcagtgcc 889
Query: 61 tgaagtacaggcatcaccacgtctagcttgacattgacactttgaataaaaatccactca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 tgaagtacaggcatcaccacgtctagcttgacattgacactttgaataaaaatccactca 829
Query: 121 aaacatacaagttatgatgatcttttgtaatttgtagtagaacagagatgctgaagcata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 aaacatacaagttatgatgatcttttgtaatttgtagtagaacagagatgctgaagcata 769
Query: 181 catttcatgatttatttctttattttggcttgtgtgaatccactctgtcttgttccttca 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 768 catttcatgatttatttctttattctggcttgtgtgaatccactctgtcttgttccttca 709
Query: 241 gtttgttacggagtttaaacaacccattctaacaataacctaaccagacattgcactttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gtttgttacggagtttaaacaacccattctaacaataacctaaccagacattgcactttc 649
Query: 301 ctaaggagccataacacttataatttcagtctcctccatctggaggggagggggacggta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ctaaggagccataacacttataatttcagtctcctccatctggaggggagggggacggta 589
Query: 361 gtgatgactccttcaatggttctgtgaactgtcgtgataggatcttctgaagacagcctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gtgatgactccttcaatggttctgtgaactgtcgtgataggatcttctgaagacagcctt 529
Query: 421 ggatctcaacaatctggaaaagcttgagttcagtggcctcagaggaaactccctgagtca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ggatctcaacaatctggaaaagcttgagttcagtggcctcagaggaaactccctgagtca 469
Query: 481 gaaagtccaacgcatgcatgaggaatttgaggagatgtacaaggtcttcttggactgctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gaaagtccaacgcatgcatgaggaatttgaggagatgtacaaggtcttcttggactgctc 409
Query: 541 ctatgactgtttggaccccaagggcacggtaggatttggaggggctaaatcacaaatctg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ctatgactgtttggaccccaagggcacggtaggatttggaggggctaaatcacaaatctg 349
Query: 601 gatccttcttcagctgcctctagctgcagccctcaaacatttaaaagctttgttgttttt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gatccttcttcagctgcctctagctgcagccctcaaacatttaaaagctttgttgttttt 289
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_f08.g1 MSMg01no135_f08.g1 CHROMAT_FILE:
MSMg01no135_f08.g1 PHD_FILE: MSMg01no135_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:26 2005
(639 letters)
>mm_chr11_65796860_65797902
Length = 1043
Score = 1133 bits (586), Expect = 0.0
Identities = 628/644 (97%), Gaps = 5/644 (0%)
Strand = Plus / Plus
Query: 1 cagggtagccagggcaaccctgtctcaaaaaagtcagatgatgatgatgatgatg-atga 59
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||
Sbjct: 200 cagggtagccagggcaaccctgtctcaaaaaagtcagatgacgatgatgatgatgaagga 259
Query: 60 aggaagaaagaaagaaacagagagaaggagagcaagagtagaatagagagagaaagaaat 119
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agggagaaagaaagaaacagagagaaggagagcaagagtagaatagagagagaaagaaat 319
Query: 120 agagagagacacgggggcccaattcacgaagatctaggtattggactgaataaacgcatt 179
|||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 320 agagagagacacaggggcccaattcatgaatatctaggtattggactgaataaacgcatt 379
Query: 180 tcacaaaattctgattgatacagcattcactagagcaatagcaaataaaatgtatatctt 239
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 380 tcacaaaattgtgattgatacagcattcactagaggaatagcaaataaaatgtatatctt 439
Query: 240 gaaagaaggaaa----aaaacaacagaaatacacaataattccacagaattcaagaaggg 295
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaaagaaggaaaaaataaaacagcagaaatacacaataattccacagaattcaagaaggg 499
Query: 296 agggaaaggaaacaatggaggaaacatataaaagtaatataggacgcctcaccctcaaat 355
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 500 agggaaaggaaacaatggaggaaacatataaaagtaacataggacgcctcaccctcaaat 559
Query: 356 gcatgactgggtatgacagcatgagcaaatggacagtattctgaaaaggcacaactgcca 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcatgactgggtatgacagcatgagcaaatggacagtattctgaaaaggcacaactgcca 619
Query: 416 agcgtgctttctaaaagtcgaatgtatagacagcacttacatttattcccaagcataaga 475
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agcgtgttttctaaaagtcgaatgtatagacagcacttacatttattcccaagcataaga 679
Query: 476 gtataggaaatctgagcatgaaacaaaaagaagcggttcctaacgatgggttctccaccc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtataggaaatctgagcatgaaacaaaaagaagcggttcctaacgatgggttctccaccc 739
Query: 536 atggtccagccaatcttggataacaaatattcagaaaggactacgtctgcatcacatgta 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 atggtccagccaatcttggataacaaatattcagaaaggactacgtctgcatcacatgta 799
Query: 596 tacaattcatctctaaataacaaacaatcacaactacctaagta 639
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tacaattcatctctaaataacaaacaatcacaactacctaagta 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1043
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1033
Effective search space: 649757
Effective search space used: 649757
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
