BAC Information

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BAC

Clone NameMSMg01-136C12
Chromosome11 (Build37)
Map Location 25,899,538 - 26,010,073
singlet/doubletdoublet
Overlap gene5730522E02Rik, LOC100042328
Upstream genenone
Downstream geneLOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136C12.T7 (MSMg01no136_c12.b1)MSMg01-136C12.TJ (MSMg01no136_c12.g1)
ACCAG342434AG342435
length680680
length of high quality
(start - end)		625 (56 - 680)595 (86 - 680)
definitionCHROMAT_FILE: MSMg01no136_c12.b1 PHD_FILE: MSMg01no136_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:27 2005CHROMAT_FILE: MSMg01no136_c12.g1 PHD_FILE: MSMg01no136_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,899,538 - 25,900,158)(26,009,527 - 26,010,073)
sequence
ATGCGNNNNNNTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCATTAAACACTCTACGGAGTGCCTCATAATTTACAG
TCTTGACTTAAGTTCATGACAAAAACAAGTAACTTAAAAAGAAAAAAGAC
TAACAAAATTAGTCTTGACCATTATAGAAGTGACGCCTACATGGAAACTG
GGCTAGTCTTCAGACCTCAGCATAGTATACACATGAGGGAAGAGGTGCAG
ATAGACTTTCTGGCCTATTGGACTGGGGAGCGTTCTGCAAGCATAGAAGT
CCTCTGTGTCCTAGCAACAGTCAAACCTACTGTGCCCAAGCCCAATGACT
CTCTGTGGCATGTGAGAGGCATGTCCCTGAGGCAAGTTTCCAAGTAAAGT
TCAGAGACAGCATGTAGTCTCTGATCACACACAGTCCCTGTGGTTGGAGT
GCACAGACAGATCTTGAGAGCTGGCATGGTCACTCTCTCCATGGTGACAC
ATGCACGTGGCATCACTCACAGGCTGTTGACGAATTCAGACGTAAGTCAA
TGCACAGAAGGATCTGATTTCACAGCTTTAAACAGAAAGTACTGAAAATG
TAATTATCATCACCAACAAACCCATCTGAAACAGTCAACGTGCAGCACAA
GGAAAAAAACATTAAAAGAAAATGCATTAA

NTAAGTNNNNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCATTATAGTTAGA
AGGCACCGTGGCAGCTCCTGTGGTATAGATTATGTAGCTGGAGCATGGGC
TGCCCATGAAAGGGAAAGGAGGCAAGGAGAATGTACTGTGTTCTTTAGTT
TTCAAATCGTGGCGTGGACTTAAATTACCATATACATGAAGCTATAAACT
CATATCAAAACTCTATCTAAAATACGTAAGTACAAATCCTAATGTCTTTG
TAGATGATTAAATTCCTTATAATAATAAGAAATGTATAATAAGTAGGAAA
TGTAACTTCCTACTATTTCTTTACAATTATACTTCACTCTGTTAATAATA
TTTATTTTCATTTATCACACATTTTTATTTGGCGTTTTGTTGTTTGTCTT
ATGATGTAGCCCAGGCTGGTCTGGGGCTCTCCGAGCTCCTGCCTTAGCCC
CTCAAGTGTGAGGATTACAGAGTTGTGCTAAACTAGCTTTGTATCTAGGT
GTTTCTTGTTTGTTCTTTCGTTTGTTTGTTTGATTTAAGAACCAGGAAAT
TGGGAGGGGTATGTTTATTCAGTTCTTTAATCTAAATGCCTAGTTCACTC
TAGTATCCTTCTTTGTTTTCTTGATATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_c12.b1 MSMg01no136_c12.b1 CHROMAT_FILE:
MSMg01no136_c12.b1 PHD_FILE: MSMg01no136_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:27 2005
         (625 letters)



>mm_chr11_25899334_25900358
          Length = 1025

 Score = 1185 bits (613), Expect = 0.0
 Identities = 619/621 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattaaacactctacggagtgcctcataatttacagtcttgacttaagttcatga 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattaaacactttacggagtgcctcataatttacagtcttgacttaagttcatga 264

                                                                       
Query: 65  caaaaacaagtaacttaaaaagaaaaaagactaacaaaattagtcttgaccattatagaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaaaacaagtaacttaaaaagaaaaaagactaacaaaattagtcttgaccattatagaa 324

                                                                       
Query: 125 gtgacgcctacatggaaactgggctagtcttcagacctcagcatagtatacacatgaggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtgacgcctacatggaaactgggctagtcttcagacctcagcatagtatacacatgaggg 384

                                                                       
Query: 185 aagaggtgcagatagactttctggcctattggactggggagcgttctgcaagcatagaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagaggtgcagatagactttctggcctattggactggggagcgttctgcaagcatagaag 444

                                                                       
Query: 245 tcctctgtgtcctagcaacagtcaaacctactgtgcccaagcccaatgactctctgtggc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcctctgtgtcctagcaacagtcaaacctactgtgcccaagcccaatgactctctgtggc 504

                                                                       
Query: 305 atgtgagaggcatgtccctgaggcaagtttccaagtaaagttcagagacagcatgtagtc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgtgagaggcatgtccctgaggcaagtttccaagtaaagttcagagacagcatgtagtc 564

                                                                       
Query: 365 tctgatcacacacagtccctgtggttggagtgcacagacagatcttgagagctggcatgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctgatcacacacagtccctgtggttggagtgcacagacagatcttgagagctggcatgg 624

                                                                       
Query: 425 tcactctctccatggtgacacatgcacgtggcatcactcacaggctgttgacgaattcag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcactctctccatggtgacacatgcacgtggcatcactcacaggctgttgacgaattcag 684

                                                                       
Query: 485 acgtaagtcaatgcacagaaggatctgatttcacagctttaaacagaaagtactgaaaat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acgtaagtcaatgcacagaaggatctgatttcacagctttaaacagaaagtactgaaaat 744

                                                                       
Query: 545 gtaattatcatcaccaacaaacccatctgaaacagtcaacgtgcagcacaaggaaaaaaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtaattatcatcaccaacaaacccatctgaaacagtcaacgtgcagcacaaggaaaaaaa 804

                                
Query: 605 cattaaaagaaaatgcattaa 625
           ||||||||||||||| |||||
Sbjct: 805 cattaaaagaaaatgaattaa 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no136_c12.g1 MSMg01no136_c12.g1 CHROMAT_FILE:
MSMg01no136_c12.g1 PHD_FILE: MSMg01no136_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:27 2005
         (595 letters)



>mm_chr11_26009527_26010521
          Length = 995

 Score = 1004 bits (519), Expect = 0.0
 Identities = 540/547 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcattatagttagaaggcaccgtggcagctcctgtggtatagattatgtagctggagca 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 547 agcattatagttagaaggcaccgtggcagctcctgtagtatagattatgtagctggagca 488

                                                                       
Query: 61  tgggctgcccatgaaagggaaaggaggcaaggagaatgtactgtgttctttagttttcaa 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 487 tgggctgcccatgaaagggaaaggaggcagggagaatgtactgtgttctttagttttcaa 428

                                                                       
Query: 121 atcgtggcgtggacttaaattaccatatacatgaagctataaactcatatcaaaactcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 atcgtggcgtggacttaaattaccatatacatgaagctataaactcatatcaaaactcta 368

                                                                       
Query: 181 tctaaaatacgtaagtacaaatcctaatgtctttgtagatgattaaattccttataataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tctaaaatacgtaagtacaaatcctaatgtctttgtagatgattaaattccttataataa 308

                                                                       
Query: 241 taagaaatgtataataagtaggaaatgtaacttcctactatttctttacaattatacttc 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 307 taagaaatgtataataagtaggaaatgtaacttcctactatttatttacaattatacttc 248

                                                                       
Query: 301 actctgttaataatatttattttcatttatcacacatttttatttggcgttttgttgttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 247 actctgttaataatatttattttcatttatcacacatttttatttggtgttttgttgttt 188

                                                                       
Query: 361 gtcttatgatgtagcccaggctggtctggggctctccgagctcctgccttagcccctcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 gtcttatgatgtagcccaggctggtctggggctctccgagctcctgccttagcccctcaa 128

                                                                       
Query: 421 gtgtgaggattacagagttgtgctaaactagctttgtatctaggtgtttcttgtttgttc 480
           |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 127 gtgtgaggattacagagttgtgctaaactagctttgtagctaggtgttttttgtttgttc 68

                                                                       
Query: 481 tttcgtttgtttgtttgatttaagaaccaggaaattgggaggggtatgtttattcagttc 540
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 67  tttcgtttgtttgtttgatttaagaaccaggaaatttggaggggtatgtttattcagttc 8

                  
Query: 541 tttaatc 547
           |||||||
Sbjct: 7   tttaatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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