BAC Information

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BAC

Clone NameMSMg01-136J13
Chromosome11 (Build37)
Map Location 30,562,451 - 30,562,961
singlet/doubletsinglet
Overlap genenone
Upstream geneRtn4, C230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452
Downstream geneLOC666470, LOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2, Stc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136J13.T7 (MSMg01no136_j13.b1)MSMg01-136J13.TJ (MSMg01no136_j13.g1)
ACCAG342755AG342756
length715715
length of high quality
(start - end)		667 (49 - 715)636 (80 - 715)
definitionCHROMAT_FILE: MSMg01no136_j13.b1 PHD_FILE: MSMg01no136_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:02 2005CHROMAT_FILE: MSMg01no136_j13.g1 PHD_FILE: MSMg01no136_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGCCGTCATAATTGCGGCGCTAATACGACTCCTATTCGAAGAGGACCG
CGGAATTCCAAAGGGCCCCTGTCCAAGAAGTTCTGTTGCTTCTGCCGCCC
ACATGCTCGCCTGTGTAAACTTGTCTCAGTGATCCCAAGATCCTGGGTGT
GCTAGGGCCTGTGGAGTTTGTACCCAAGATGGCACTGGGCTGGAGCTACT
GGAAGGGATCACAGCTGCTGGTTGGGCGGGTTTCCTTTGTCCCTGTTCCT
GCTGGCACAAGACCCTCTGTTTTTTTTTTTTTTTTTGAACAGATGTTGCG
TTCCACTCACCAGTGATCTCAAGATCCTGGGGCTTCTAGGGTGCCTGCAG
TGTGGAGAATCCTCTGTGGACCTTGGCACCCTCCACTGAGTTTGCTCCCA
AGATGGTGTGGGGGAGGTAAATTTCTTAGAAGAAATGGATGGCTGTACAT
TAACTCAGAATGTCTAAGAAAGGAGGGGCTGGGGTATGGTCTAAATGAGA
GTGAGAGCATAAGGTAAAAGTTGAGTTCAAGGAAAGGAATGTTCAGAAGA
CAGTTTTAATTAATGAGACTTAATAACTCCACTAGCGCTTACTACCTTTC
TAGAGGACTGGGATTAATAGGGATTATAGAGGTACCATTCTACCCCTAGG
CTCTAATGATTCTAAATGCAGGGCAGGGCCATTATATAGTTGCATAGATG
TAGGAATTCCAAATA

NNNNCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTATCCCA
TGTTTTAATGAGGTTATTTGAATTTCTGGAGTCCAGCTACTTGAGTTCTT
TGTATATATTGGATATTAGTGCCCTATCAGATTTAGGATTGGTGAAGATC
CTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTGC
ATTAAAGAAGCTTTGCAATTTCATTAGGTCTCATTTGTCAATTCTTGATC
TTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTCCCCTGTGCCCA
TATCTTCGAGGTTCTTCCCCACTTTCTCATCTATAAGTTTCAGTGTTTCT
GGTTTTGTGTGGAGTTCCTTGATCCACTTAGACTTGAGCTTTGTATAAGG
AGATAAGAATGGATCAATTCGAGATAAGAATGGATCAATTTGCATTCTTC
TACATGATAACCACTAGTTGTGCCACCACCAATTGTTGAAAATGCTGTCT
TTTTTCCACTGGATGGTTTTGGGTCCCTTGTCAAAGATCAAGTGACCATA
GGTGTGTGGGTTCATTTCTGAGTCTTCAATTCTATTCCATTGATTGACCT
GTTTATTGCTGTACAAGTACTATGCACTTTTTATCACAATTGCTCTGTAG
TACAGTTTGAGGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_j13.b1 MSMg01no136_j13.b1 CHROMAT_FILE:
MSMg01no136_j13.b1 PHD_FILE: MSMg01no136_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:02 2005
         (667 letters)



>mm_chr11_30561895_30562961
          Length = 1067

 Score =  978 bits (506), Expect = 0.0
 Identities = 511/514 (99%), Gaps = 3/514 (0%)
 Strand = Plus / Minus

                                                                        
Query: 154  gaagggatcacagctgctggttgggcgggtttcctttgtccctgttcctgctggcacaag 213
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 gaagggatcacagctgctggttgggcgggtttcctttgtccctgttcctgctggcacaag 1008

                                                                        
Query: 214  accctctgtttttttttttttttttgaacagatgttgcgttccactcaccagtgatctca 273
            ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 accctctg---ttttttttttttttgaacagatgttgcgttccactcaccagtgatctca 951

                                                                        
Query: 274  agatcctggggcttctagggtgcctgcagtgtggagaatcctctgtggaccttggcaccc 333
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950  agatcctggggcttctagggtgcctgcagtgtggagaatcctctgtggaccttggcaccc 891

                                                                        
Query: 334  tccactgagtttgctcccaagatggtgtgggggaggtaaatttcttagaagaaatggatg 393
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890  tccactgagtttgctcccaagatggtgtgggggaggtaaatttcttagaagaaatggatg 831

                                                                        
Query: 394  gctgtacattaactcagaatgtctaagaaaggaggggctggggtatggtctaaatgagag 453
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830  gctgtacattaactcagaatgtctaagaaaggaggggctggggtatggtctaaatgagag 771

                                                                        
Query: 454  tgagagcataaggtaaaagttgagttcaaggaaaggaatgttcagaagacagttttaatt 513
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770  tgagagcataaggtaaaagttgagttcaaggaaaggaatgttcagaagacagttttaatt 711

                                                                        
Query: 514  aatgagacttaataactccactagcgcttactacctttctagaggactgggattaatagg 573
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710  aatgagacttaataactccactagcgcttactacctttctagaggactgggattaatagg 651

                                                                        
Query: 574  gattatagaggtaccattctacccctaggctctaatgattctaaatgcagggcagggcca 633
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650  gattatagaggtaccattctacccctaggctctaatgattctaaatgcagggcagggcca 591

                                              
Query: 634  ttatatagttgcatagatgtaggaattccaaata 667
            ||||||||||||||||||||||||||||||||||
Sbjct: 590  ttatatagttgcatagatgtaggaattccaaata 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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