Query= MSMg01no136_o22.b1 MSMg01no136_o22.b1 CHROMAT_FILE:
MSMg01no136_o22.b1 PHD_FILE: MSMg01no136_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:28 2005
(644 letters)
>mm_chr11_43770613_43771656
Length = 1044
Score = 1199 bits (620), Expect = 0.0
Identities = 635/640 (99%)
Strand = Plus / Plus
Query: 5 gaattccagaaagctcacgctggacgggagatcacccacctgactctgctcagtaagaaa 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagaaagctcaagctggacgggagatcacccacctgactctgctcagtaagaaa 264
Query: 65 agagtctgccgctgtaacaacactcagcaggaagaagcacaggaggcccacgtggggctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agagtctgccgctgtaacaacactcagcaggaagaagcacaggaggcccacgtggggctg 324
Query: 125 ctgacccaagtcaatgctgcttctgtcagtcttagtcccttggtcccagtaactcttctc 184
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 325 ctgacccaagtcaatgctgcttctgttagtcttagtcccttggtcccagtaactcttctc 384
Query: 185 atgccgtcccatgccatgttttcatctgtaaattgcagttcacaactactgtgcagtctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgccgtcccatgccatgttttcatctgtaaattgcagttcacaactactgtgcagtctg 444
Query: 245 actatgcaagtggaatgtgattctatggcttgatttcacacacaccacaagggcacaacc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actatgcaagtggaatgtgattctatggcttgatttcacacacaccacaagggcacaacc 504
Query: 305 tcccctccactagctccttccttctcagagtttgatctgtcgttgatacccggacacgcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcccctccactagctccttccttctcagagtttgatctgtcgttgatacccggacacgcc 564
Query: 365 ccatggggacaaactgctctgtgcttggatgtaattggattttggaaccaaatgggggac 424
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 565 ccatggggacaaattgctctgtgcttggatgtaattggattttggaaccaaatggggaac 624
Query: 425 ctggaattcctatagggatgagcaggaaagggaagaaaatgtgcattgtcacaggtagga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctggaattcctatagggatgagcaggaaagggaagaaaatgtgcattgtcacaggtagga 684
Query: 485 ggcacaggccatgcacccggggtctaaaagagcagccactgctctctaccttagcctgtc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggcacaggccatgcacccggggtctaaaagagcagccactgctctctaccttagcctgtc 744
Query: 545 tagaccatacctgttttttcatggaagccaggatatgcttttaaaaataaacaactcttt 604
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 745 tagaccatacctgttttttcatggaagccaggatatacttttaaaaataaacaactcttt 804
Query: 605 tgaatattaaacacaggcaaaagttgaaagtactctctgg 644
||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgaatattaaacacaggcaaaagttgaaagtactctctgg 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_o22.g1 MSMg01no136_o22.g1 CHROMAT_FILE:
MSMg01no136_o22.g1 PHD_FILE: MSMg01no136_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:28 2005
(616 letters)
>mm_chr11_43897699_43898714
Length = 1016
Score = 1065 bits (551), Expect = 0.0
Identities = 599/617 (97%), Gaps = 6/617 (0%)
Strand = Plus / Minus
Query: 1 cagacccctttcatcaggctgatggacatggtctttctgactcatctgaccacatcaaat 60
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 944 cagacccctttcatcaggctaatggagatggtctttctgactcatctgaccacatcaaat 885
Query: 61 tcctcatgatctaatccagtgggaagaaaagcattaataataaaagatctgtgatggaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 tcctcatgatctaatccagtgggaagaaaagcattaataataaaagatctgtgatggaga 825
Query: 121 gagatggctcagtggttaagagcgaggactgctcttacaaatgacctgaattcagttttc 180
||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||
Sbjct: 824 gagatggctcagtggttaagagcaaggactgctcttacaaataatctgaattcagttttc 765
Query: 181 cagcactcgtatgcgctgaaaactttcaactttgtaaccccagctccagcgagttcaatg 240
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 764 cagcactcgtatgcgctgaaaactttcaactttgtaactccagctccagagagttcaatg 705
Query: 241 ccctctctgtcctatgtgggcacctgaacacacttggcatttacatatatgcacacatgt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tcctctctgtcctatgtgggcacctgaacacacttggcatttacatatatgcacacatgt 645
Query: 301 gcacacacacatacacacacacacacatatttgcatacattatataaaactttaaaatac 360
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gcacacacacat----acacacacacatatttgcatacattatataaaactttaaaatac 589
Query: 361 cagttaatagtttactgatgtatcattatgtaatatgcactgggcttttatctatataaa 420
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 588 cagttaatagtttgctgatgtatcattatgtcatatgcactgggcttttatctatataaa 529
Query: 421 gtggttatcttttattattctattacttttttaatgattttaaaatttagtattttatgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gtggttatcttttattattctattacttttttaatgattttaaaatttagtattttatgc 469
Query: 481 atatatacaatatattacaaacatattaaccctgttatcctctcttatctatatcacaat 540
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 468 atatatacaatgtattacaaacatattaaccctgttatcctctcttatctacatcac-at 410
Query: 541 -cctgtagacaccccctccttcctggcttgtcctcttcccactttcatgtcctgtggtct 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gcctgtagacaccccctccttcctggcttgtcctcttcccactttcatgtcctgtggtct 350
Query: 600 tgttcaggtggctgtgg 616
|||||||||||||||||
Sbjct: 349 tgttcaggtggctgtgg 333
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
