Query= MSMg01no137_k24.b1 MSMg01no137_k24.b1 CHROMAT_FILE:
MSMg01no137_k24.b1 PHD_FILE: MSMg01no137_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:28 2005
(635 letters)
>mm_chr11_85852959_85853993
Length = 1035
Score = 1178 bits (609), Expect = 0.0
Identities = 630/637 (98%), Gaps = 2/637 (0%)
Strand = Plus / Plus
Query: 1 caaatgtgttagcgcggatcccccaggaacctggacagcactccagaagggctgccttct 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 caaatgtgttagcgcggatcccccaggaacctggacagcgctccagaagggctgccttct 260
Query: 61 gtaactaacatgcctgagcagatgtgaagtttacagactaaacgtttcctacgagctgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaactaacatgcctgagcagatgtgaagtttacagactaaacgtttcctacgagctgca 320
Query: 121 tgcatttaactgttaaagtagttttaaaatagcttgacttgatctccaaacacggagagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcatttaactgttaaagtagttttaaaatagcttgacttgatctccaaacacggagagc 380
Query: 181 gtggtgataccatgtcacagagcagattcgtcgctccagacttcccatcaatggcacatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggtgataccatgtcacagagcagattcgtcgctccagacttcccatcaatggcacatt 440
Query: 241 gtgagctacttggaaggactgtgttccttatattcctagagtgctctgggtctgatggga 300
||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtgcaacttggaaggaccgtgttccttatattcctagagtgctctgggtctgatggga 500
Query: 301 tttgagaatggtttcttattataaataaacactgcttaataaggtacagaactagttaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgagaatggtttcttattataaataaacactgcttaataaggtacagaactagttaag 560
Query: 361 tgagactatgacatgtactttaatcacactttacagaaaacagatagatggtgaagcagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagactatgacatgtactttaatcacactttacagaaaacagatagatggtgaagcagt 620
Query: 421 taagggcacttactgttcttgtagaggacatgggtttggttcccaacacctacgtcttag 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taagggcacttactgctcttgtagaggacatgggtttggttcccaacacctacgtcttag 680
Query: 481 ttcataatcagtcggattcttagttccccgg-ttcttatgccctcttctggcctctgcag 539
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 681 ttcataatcagtcggattcttagttccccgggttcttatgccctcttctggcctctgcag 740
Query: 540 gcacacggtgcactggcataca-tgcagccaaaacactcaaatacagaaataaaaataaa 598
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcacacggtgcactggcatacaatgcagccaaaacactcaaatacagaaataaaaataaa 800
Query: 599 tacatttcaaagtatagaaataattttaagaattcaa 635
|||||||||||||||||||||||||||||||||||||
Sbjct: 801 tacatttcaaagtatagaaataattttaagaattcaa 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_k24.g1 MSMg01no137_k24.g1 CHROMAT_FILE:
MSMg01no137_k24.g1 PHD_FILE: MSMg01no137_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:28 2005
(276 letters)
>mm_chr11_85981133_85981808
Length = 676
Score = 511 bits (264), Expect = e-149
Identities = 273/276 (98%)
Strand = Plus / Minus
Query: 1 ttggataccatttctggttgtgtattccaagatggccttgaatttggaatctttctgcca 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttggatatcatttctggttgtgtattccaagatggccttgaatttggaatctttctgcca 510
Query: 61 gtctcttgcatgctgggattataggctatgccagctttttattttattttttcaataaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gtctcttgcatgctgggattataggctatgccagctttttattttattttttcaataaac 450
Query: 121 ttcatgaagtcactcagcggggctcattgctatttcaggacttattgctacagttgtatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttcatgaagtcactcagcggggctcattgctatttcaggacttattgctacagttgtatc 390
Query: 181 tgcatatagtgctatcaggaaaagtttataacaggtaagtctttgtggtatgtttgttat 240
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 389 tgcatatagtgctatcaggaaaagtttataacaggtaagtctttgtggcatgtttgttaa 330
Query: 241 agtgagactccttattgcatgaatttttcttatgta 276
||||||||||||||||||||||||||||||||||||
Sbjct: 329 agtgagactccttattgcatgaatttttcttatgta 294
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space: 178089
Effective search space used: 178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
