Query= MSMg01no138_a11.b1 MSMg01no138_a11.b1 CHROMAT_FILE:
MSMg01no138_a11.b1 PHD_FILE: MSMg01no138_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:55 2005
(631 letters)
>mm_chr11_45803133_45804163
Length = 1031
Score = 1156 bits (598), Expect = 0.0
Identities = 604/606 (99%)
Strand = Plus / Minus
Query: 5 gaattcagatccccgaactctgtataacaagccaggggcctcacaagcacctgtaacgcc 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gaattcagatcccagaactctgtataacaagccaggggcctcacaagcacctgtaacgcc 547
Query: 65 agtttaaggattcaacagtacatttctggcctctgtacacacttacacacacatacaaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 agtttaaggattcaacagtacatttctggcctctgtacacacttacacacacatacaaat 487
Query: 125 acacataccaaatctttaaagaaagagttaggatttgattgaaggaaaaacaattaaacc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 acacataccaaatctttaaagaaagagttaggatttgattgaaggaaaaacaattaaacc 427
Query: 185 taagcagatacttctacactaatctgctataaggagatctgaagtgccttgcaacaatta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 taagcagatacttctacactaatctgctataaggagatctgaagtgccttgcaacaatta 367
Query: 245 caaggtcaggcgaacttgtaaaatctctcaaaactttttaaaagatttatttaatttatg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 caaggtcaggcgaacttgtaaaatctctcaaaactttttaaaagatttatttaatttatg 307
Query: 305 catatgagtacactattgctctcttcagatacaccagaagaatgcatcagatcccattac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 catatgagtacactattgctctcttcagatacaccagaagaatgcatcagatcccattac 247
Query: 365 agacggctatgagccaccatgtagttgctgggaattgaactcaggacctctggaagagta 424
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 agacggttatgagccaccatgtagttgctgggaattgaactcaggacctctggaagagta 187
Query: 425 gtcagtgctcttaaccactgaaccaactctcctaacccaaatttttatttcttgaattat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 gtcagtgctcttaaccactgaaccaactctcctaacccaaatttttatttcttgaattat 127
Query: 485 tactatactcaagacattaacttaacaatctgtgtttgacattgagttctttttcctata 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 tactatactcaagacattaacttaacaatctgtgtttgacattgagttctttttcctata 67
Query: 545 ctcagcacaagcacttagttatcaggaaaaaatacgttacaaaaactttacagaataaaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 ctcagcacaagcacttagttatcaggaaaaaatacgttacaaaaactttacagaataaaa 7
Query: 605 cggcac 610
||||||
Sbjct: 6 cggcac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_a11.g1 MSMg01no138_a11.g1 CHROMAT_FILE:
MSMg01no138_a11.g1 PHD_FILE: MSMg01no138_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:56 2005
(383 letters)
>mm_chr11_45646060_45646842
Length = 783
Score = 714 bits (369), Expect = 0.0
Identities = 379/383 (98%), Gaps = 3/383 (0%)
Strand = Plus / Plus
Query: 1 aaggccagcttggattacccaaagaatctgaggacagcctgaatttcatgagatatgggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggccagcttggattacccaaagaatctgaggacagcctgaatttcatgagatatgggg 260
Query: 61 gtcgggggcaaagagaaaatgagaattattaacaaaacagtcaaagaactaacatatttt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcgggggcaaagagaaaatgagaattattaacaaaacagtcaaagaactaacatatttc 320
Query: 121 ataagactgtgcagaaatagatccttctcctttaatcccagcacttgggaggcagaggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataagactgtgcagaaatagatccttctcctttaatcccagcacttgggaggcagaggca 380
Query: 181 ggcggatttctgagttcgagtccagcctggtctacagagtgagttccaggacagccaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcggatttctgagttcgagtccagcctggtctacagagtgagttccaggacagccaggg 440
Query: 241 ctacacagagaaaccctgtcttgaaaaaaagaaaggaagagagaaaggaagaaagaagga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctacacagagaaaccctgtcttgaaaaaaagaaaggaagagagaaaggaagaaagaagga 500
Query: 301 aagaaagagagagagagagagagagagagagagagagagagacaagagaagagaagagaa 360
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 501 aagaaagagagagagagagagagagagagagagaga-agaga--agagaagagaagagaa 557
Query: 361 gagaagagaagagaagagaagag 383
|||||||||||||||||||||||
Sbjct: 558 gagaagagaagagaagagaagag 580
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space: 289476
Effective search space used: 289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
