Query= MSMg01no139_b06.b1 MSMg01no139_b06.b1 CHROMAT_FILE:
MSMg01no139_b06.b1 PHD_FILE: MSMg01no139_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:20 2005
(401 letters)
>mm_chr11_5162955_5163755
Length = 801
Score = 760 bits (393), Expect = 0.0
Identities = 399/401 (99%)
Strand = Plus / Minus
Query: 1 caaacgattgaacaagattcttcttgccacagctctgggtcgtgtgggtggagagggaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 caaacgattgaacaagattcttcttgccacagctctgggtcgtgtgggtggagagggaca 542
Query: 61 gaaaggcaggcgcctcgtgggaggtagctacgcccttggggcccagctctgggagctgcc 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 541 gaaaggcaggcgcctcgtgggaggtatctacgcccttggggcccagctctgggagctgcc 482
Query: 121 tcctgagtgtgggaaggctggggagaacacctgcccagtgagagggcgaggggcacaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcctgagtgtgggaaggctggggagaacacctgcccagtgagagggcgaggggcacaggg 422
Query: 181 cgcaggggtgggtgtaccccaggtaggccagggtatcccacggggccaggatcgcccagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cgcaggggtgggtgtaccccaggtaggccagggtatcccacggggccaggatcgcccagc 362
Query: 241 cctgctccgggcacagcgagtaggaacaggagggcagatgttcctgccaccgccaagcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cctgctccgggcacagcgagtaggaacaggagggcagatgttcctgccaccgccaagcct 302
Query: 301 ggtgcaggcctgtacttgccagccccggaccaaggacttgaaagctctcgctgcacagcc 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 301 ggtgcaggcctgtacttgccagccccggaccaaggacttgaaagctctcggtgcacagcc 242
Query: 361 cggacctgtcctgccgggcgtcgccgtggcgttttaagcaa 401
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cggacctgtcctgccgggcgtcgccgtggcgttttaagcaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space: 310464
Effective search space used: 310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_b06.g1 MSMg01no139_b06.g1 CHROMAT_FILE:
MSMg01no139_b06.g1 PHD_FILE: MSMg01no139_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:21 2005
(493 letters)
>mm_chr11_5025862_5026756
Length = 895
Score = 893 bits (462), Expect = 0.0
Identities = 487/496 (98%), Gaps = 3/496 (0%)
Strand = Plus / Plus
Query: 1 attgtcctgtgaaaaccgaaatccacgggggttcaaatccctccataaaaggcttagtct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 attgtcctgtgaaaaccgaaatccacgggggttcaaatccctccataaaaggcttattct 260
Query: 61 ttgtatataacttgtagagtatagagaagcgtccatcagcctccagattctttataatat 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtatataacttgtagtgtatagagaagcgtccatcagcctccagattctttataatat 320
Query: 121 taatgcaaagactct--acggttgctgctgtacagcctgagaactgatgctaagacctgg 178
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatgcaaagactctgtacggttgctgctgtacagcctgagaactgatgctaagacctgg 380
Query: 179 gtctcagctggtggtggtggcacatgcttggaatggcagctctgttgagtgctgacgatt 238
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||
Sbjct: 381 gtctcagctggtggtggtggcacatgcctggaatggcagctctgttaagtgctgacaatt 440
Query: 239 ttttaaaattcactgtatttttatttacttgttctgccttt-gatgcaggctcacactcc 297
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 ttttaaaattcactgtatttttatttacttgttctgccttttgatgcaggctcacactcc 500
Query: 298 gtagcccggggctgatcactcattttctaacttactcaggctggcctaaatgcgaagcga 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtagcccggggctgatcactcattttctaacttactcaggctggcctaaatgcgaagcga 560
Query: 358 ttctccatcctcaacctgccaagtcctggaattacaggcaggagccaccatgtcatttta 417
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 ttctccatcctcaacctgccaagtcctggaattacaggcatgagccaccatgtcatttta 620
Query: 418 gacgctgttaactatgcccacgaaaagggaagcattctgcacagtggtggtgcacacctt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gacgctgttaactatgcccacgaaaagggaagcattctgcacagtggtggtgcacacctt 680
Query: 478 taatcccagaacactg 493
||||||||||||||||
Sbjct: 681 taatcccagaacactg 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 895
Length adjustment: 10
Effective length of query: 483
Effective length of database: 885
Effective search space: 427455
Effective search space used: 427455
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
