Query= MSMg01no140_a04.b1 MSMg01no140_a04.b1 CHROMAT_FILE:
MSMg01no140_a04.b1 PHD_FILE: MSMg01no140_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:36 2005
(561 letters)
>mm_chr11_13356607_13357568
Length = 962
Score = 1042 bits (539), Expect = 0.0
Identities = 555/561 (98%), Gaps = 4/561 (0%)
Strand = Plus / Minus
Query: 5 gaattcttgcttctctcc-gcatccacttgtgtggtttatgctaatagagagggtatgaa 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 gaattcttgcttctctccagcatccacttgtgtggtttatgctaatagagagggtatgaa 854
Query: 64 ttcactcaaaatgtactttaaatgtaaccaaaata--tctctttctctatccctctctct 121
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 853 ttcactcaaaatgtactttaaatgtaaccaaaatatctctctttctctatccctctctct 794
Query: 122 ccatctccatatgtccctctcttctctctctaaaaggtctgttttgcacaagaaatctca 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ccatctccatatgtccctctcttctctctctaaaaggtctgttttgcacaagaaatctca 734
Query: 182 tgttttcatgtaagcagtagttgtcatacttacttgaacttgtctctcccacgggcacca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tgttttcatgtaagcagtagttgtcatacttacttgaacttgtctctcccacgggcacca 674
Query: 242 aatctatattacctacctgaagagtaagcagtcagttcaccc-gatgactcacagctgcc 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 673 aatctatattacctacctgaagagtaagcagtcagttcaccctgatgactcacagctgcc 614
Query: 301 aagggagctggcacgtaaaggtgtttataaacagttttatctctgtgaactcctaaggtt 360
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 613 aagggagctgggacgtaaaggtgtttataaacagttttatctctgtgagctcctaaggtt 554
Query: 361 ctgaatagataggcagggtctgtaacttctaattctgtagcagaattgattagtcctcac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ctgaatagataggcagggtctgtaacttctaattctgtagcagaattgattagtcctcac 494
Query: 421 tctgagagctccacattagcatctctgcagcagtttcactcagcgcctgacttgttctta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tctgagagctccacattagcatctctgcagcagtttcactcagcgcctgacttgttctta 434
Query: 481 gtcaggctgtcatgggactggcaagttccagagactaattgcaagagaacatttaataca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gtcaggctgtcatgggactggcaagttccagagactaattgcaagagaacatttaataca 374
Query: 541 tgacctaccttgaattaattc 561
|||||||||||||||||||||
Sbjct: 373 tgacctaccttgaattaattc 353
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 962
Length adjustment: 10
Effective length of query: 551
Effective length of database: 952
Effective search space: 524552
Effective search space used: 524552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_a04.g1 MSMg01no140_a04.g1 CHROMAT_FILE:
MSMg01no140_a04.g1 PHD_FILE: MSMg01no140_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:36 2005
(476 letters)
>mm_chr11_13236798_13237673
Length = 876
Score = 859 bits (444), Expect = 0.0
Identities = 468/476 (98%)
Strand = Plus / Plus
Query: 1 ttgacaagagtgaggtgagccacagagatgttacagcagagaaaaattaaatttctgtaa 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgacaggagtgaggtgagccacagagatgttacagcagagaaaaattaaatttctgtaa 260
Query: 61 gtgttaaccaaaagcagtttctgcggagcttgtttcccatgggagtaacagttcttggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgttaaccaaaagcagtttctgcggagcttgtttcccatgggagtaacagttcttggaa 320
Query: 121 gctggaaggagctgtagaatgaatacatgtctgaggctgaagctcagaatcagagactga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctggaaggagctgtagaatgaatacatgtctgaggctgaagctcagaatcagagactga 380
Query: 181 gtcaggaatgagagttcccttttactccagcttctagtcaggtcctagagcctggcctag 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 gtcaggaatgagagttcccttttactccagcttctagtcaggtcctggagcctggcctag 440
Query: 241 ataagcttccagtacatgacagaaacctttggtcttgagaatctccagtgagtctgcccc 300
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 ataagcttccagtacatggcagaaacctttggtcttgagaatctccagtgtgtctgcccc 500
Query: 301 cactaaatcttaaaggcagtctttcaagatagttggcagacatatcctggagtcctcatt 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 cactaaatcttaaaggcagtctttcaagatagttggcagacagatcctggagtcctcatt 560
Query: 361 tcaggcttctctttatggagacagcacctgagaccaggatctgatttttgaaatctttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaggcttctctttatggagacagcacctgagaccaggatctgatttttgaaatctttat 620
Query: 421 cttcttttacccattgttccttaagcagctctactgctttctgtggtctgaagcct 476
|||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 cttcttttaccctttggtccttaagcagctctactgctttctgtgctctgaagcct 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
