Query= MSMg01no140_n19.b1 MSMg01no140_n19.b1 CHROMAT_FILE:
MSMg01no140_n19.b1 PHD_FILE: MSMg01no140_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:43 2005
(593 letters)
>mm_chr11_54312818_54313811
Length = 994
Score = 1120 bits (579), Expect = 0.0
Identities = 588/591 (99%), Gaps = 1/591 (0%)
Strand = Plus / Plus
Query: 4 ggaattcacctttctaatcgaaaatgcctccaaaa-tcagtatggcttactttatttatt 62
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 204 ggaattcacctttctaatggaaaatgcctccaaaaatcagtatggcttactttatttatt 263
Query: 63 tggttaactatatatgttactttactataactgtgtctgcattgaaggcaagcttaatta 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggttaactatatatgttactttactataactgtgtctgcattgaaggcaagcttaatta 323
Query: 123 tagaattaggagaataactctttgtcttaattattacttatttatggctaagctatccta 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tagaattaggagaataactctttgtcttaattattacttatttatggctaagctatccta 383
Query: 183 agatgatccaatgataggatatggaagagtactgcagaactatatgaataaaaacgagca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agatgatccaatgataggatatggaagagtactgcagaactatatgaataaaaacgagca 443
Query: 243 tatctttatgcttaattaaaattcctgatgttagagaatttccccaaggattctaatttt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tatctttatgcttaattaaaattcctgatgttagagaatttccccaaggattctaatttt 503
Query: 303 gtgtgtgtatgaattgcattcatttatgataattttgtttcatgaagtgtaaaaatataa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtgtgtgtatgaattgcattcatttatgataattttgtttcatgaagtgtaaaaatataa 563
Query: 363 ggaaggactcagattccattgttagaattttatttccttgtgagtgacaaggcgactttc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggaaggactcagattccattgttagaattttatttccttgtgagtgacaaggcgactttc 623
Query: 423 ctcaaacactaagcagaagtggaggtgagctgggctgcagtgagagcagcttgctgggcc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctcaaacactaagcagaagtggaggtgagctgggctgcagtgagagcagcttgctgggcc 683
Query: 483 aaccgagcgaccgaccaacatgctggggcttgctgtgagattctccagctgttttaccct 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaccgagcgaccgaccaacatgctggggcttgctgtgagattctccagctgttttaccct 743
Query: 543 agtttccttcttactgtttctcaagcttttactatacacaagtgactcaga 593
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agtttccttcttactgtttctcaagcttttactatacacaagtgactcaga 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 994
Length adjustment: 10
Effective length of query: 583
Effective length of database: 984
Effective search space: 573672
Effective search space used: 573672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_n19.g1 MSMg01no140_n19.g1 CHROMAT_FILE:
MSMg01no140_n19.g1 PHD_FILE: MSMg01no140_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:43 2005
(626 letters)
>mm_chr11_54457744_54458765
Length = 1022
Score = 1087 bits (562), Expect = 0.0
Identities = 604/626 (96%), Gaps = 17/626 (2%)
Strand = Plus / Minus
Query: 1 aatgccagctgcaactacttaggaagaccctgtttcaaaaaaaaaaaaaaaaaaaaaaaa 60
|||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 876 aatgccagctgcaactacttaggaagaccctgtttc-------------aaaaaaaaaaa 830
Query: 61 aaaaaaagccaagaactagtggatctggttcaatgggcagattacttcgccttacatagg 120
|||||||||||||||||||| |||||||||||| |||||||||||| ||||||||| ||
Sbjct: 829 aaaaaaagccaagaactagt-aatctggttcaat-ggcagattactt-gccttacat-gg 774
Query: 121 ggaagaccccccaaaaactgcaagaaaaacttatccaaattcatttaaaatggtgtcaaa 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ggaagaccccccaagaactgcaagaaaaacttatccaaattcatttaaaatggtgtcaaa 714
Query: 181 ataatacattctcaaaaatactgagcagctagtttaacagataaaaatgaaaaactaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ataatacattctcaaaaatactgagcagctagtttaacagataaaaatgaaaaactaatt 654
Query: 241 ctcacaaactggcctcataaatctgtaggaatcttatcttttaggcttttagtgactgaa 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ctcacaaactggcctcagaaatctgtaggaatcttatcttttaggcttttagtgactgaa 594
Query: 301 atgattgacatattctactgcatacatacaaaagaggtgtagcacaaagcaaaaaactca 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 593 atgattgacatattctactgcatacatacaagagaggtgtagcacaaagcaaaaaactca 534
Query: 361 acaaagaaaaaattcaataaaaatacatcctgaatttaaacaaacccatttctagtagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 acaaagaaaaaattcaataaaaatacatcctgaatttaaacaaacccatttctagtagat 474
Query: 421 cttttttccttggtaccaattcaaaattatcatatgggaaatactcaactggctgctcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cttttttccttggtaccaattcaaaattatcatatgggaaatactcaactggctgctcct 414
Query: 481 ggtgacagcaatttctgtttcctgctatgaacctagtgtccatgcctagtaacctacttc 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 413 ggtgacagcaatttctgtttcctgctatgaacctagtgtccatgcctagtaacctatttc 354
Query: 541 cactctccaaagaatatgcataatgccattggtttagctgatcagaaagggtctataatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cactctccaaagaatatgcataatgccattggtttagctgatcagaaagggtctataatg 294
Query: 601 agccacaattgtaacattctctagtt 626
||||||||||||||||||||||||||
Sbjct: 293 agccacaattgtaacattctctagtt 268
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1022
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1012
Effective search space: 623392
Effective search space used: 623392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
