Query= MSMg01no141_f17.b1 MSMg01no141_f17.b1 CHROMAT_FILE:
MSMg01no141_f17.b1 PHD_FILE: MSMg01no141_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:39 2005
(239 letters)
>mm_chr11_48434159_48434798
Length = 640
Score = 400 bits (207), Expect = e-116
Identities = 229/239 (95%), Gaps = 7/239 (2%)
Strand = Plus / Plus
Query: 1 gtgctatgattacagatatgtctggctccggccg---ttttttcctgggtgtatgcccct 57
|||||||||||||||||||||||||||| || | |||||||||| ||||||||||||
Sbjct: 201 gtgctatgattacagatatgtctggctctgg--gtgtttttttcctgagtgtatgcccct 258
Query: 58 ctacatcttgtttttctgaggatatgtttgattttctgtttcaatatattagtctgcacc 117
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 259 ctacatcttgtttttctgaggatatgtttgattttctgtttcaatatattagcctgcacc 318
Query: 118 tttctggtgggtacctttttcctgtgtgtaggtttctcagtatgcatgtgtgtgttcctg 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tttctggtgggtacctttttcctgtgtgtaggtttctcagtatgcatgtgtgtgttcctg 378
Query: 178 tctgtatgtgtatgtagtgtgtatgtgtatttgtgcgtgtgtgtgtgtgtatttagttc 236
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 379 tctgtatgtgtatgtagtgtgtatgtgtatttgtg--tgtgtgtgtgtgtatttagttc 435
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 640
Length adjustment: 9
Effective length of query: 230
Effective length of database: 631
Effective search space: 145130
Effective search space used: 145130
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no141_f17.g1 MSMg01no141_f17.g1 CHROMAT_FILE:
MSMg01no141_f17.g1 PHD_FILE: MSMg01no141_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:40 2005
(769 letters)
>mm_chr11_48364269_48365437
Length = 1169
Score = 1346 bits (696), Expect = 0.0
Identities = 747/764 (97%)
Strand = Plus / Plus
Query: 6 tgatcctcctctctttacttctagagtattgggattcccagcatgcaccaccacacccgc 65
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct: 206 tgatcctcctctctttacttctagagtattgggattccaagcatgcaccacgacacctgg 265
Query: 66 cttggcagtgcatttttttaaactatattttttttatgtcttctcacctctttcactatg 125
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 266 cttggcagcgcatttttttaaactatatttttttaatgtcttctcacctctttcactatg 325
Query: 126 acttcttgttctaattgggaataacacatgaagtggcaataaatatattccacaatctgg 185
|||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 326 actttttgttctaattgggaataacacatgaagtggcattaaatatatttcacaatctgg 385
Query: 186 ctcccagtggtcctcaggcaaagagaaagtatggcaggaagcacaacttagtctcagatg 245
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctcccactggtcctcaggcaaagagaaagtatggcaggaagcacaacttagtctcagata 445
Query: 246 ctcagaatcctacctgggtcctgacatgcatctgttaactggctttgcttcattcctgtc 305
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 446 ctcagaatcctacctgggtcctgacatgcatctgttagctggctttgcttcattcctgcc 505
Query: 306 ttcagcatcctctttgatttcatcctttggacatgctacacagctcgacacagcacactc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttcagcatcctctttgatttcatcctttggacatgctacacagctcgacacagcacactc 565
Query: 366 ctacatgagagttgctccagcccacagccttctggtttccacagctcttgataagccaaa 425
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctacatgagagctgctccagcccacagccttctggtttccacagctcttgataagccaaa 625
Query: 426 tcaccatctgtggtacctcatcaaggagtgatgagctgatctgtcactggtaggatcagc 485
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 626 tcaccatctgtggtacctcatcaaggagtgatgagctgatctggcactggtaggatcagc 685
Query: 486 accatggtttcattatcacattccaagttcttatctgaaggcaactccttagcttcatcc 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 accatggtttcattatcacattccaagttcttatctgaaggcaactccttagcttcatcc 745
Query: 546 cctcctaagatctgggtagctacttctaaaatcacaggcgcctggcaatcctaaagtggc 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 cctcctaagatctgggtagctacttctaaaatcacaggcgcctggcaatcctaaagtggc 805
Query: 606 atcaccatatgtgaaagcttgcagtgacttttgtcactcttgtgtgcctggacagcttcc 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 atcaccatatgtgaaagcttgcagtgacttttgtcactcttgtgtgcctggacagcttcc 865
Query: 666 aaagggtaaaacaattttcctctcactgaaccacaagtaaatctcaccaacgctcgtgtt 725
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 aaagggtaaaacaattttcctctcactgaaccacaagtaaatctcaccaacgctcgtgtc 925
Query: 726 attaatcagtcatttcatgtctggaagatattctatatgagtaa 769
|||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 926 attaatcagtcatttcatgtctgggagatattctatatgagtaa 969
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 769
Length of database: 1169
Length adjustment: 10
Effective length of query: 759
Effective length of database: 1159
Effective search space: 879681
Effective search space used: 879681
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
