BAC Information

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BAC

Clone NameMSMg01-141G15
Chromosome11 (Build37)
Map Location 87,210,213 - 87,210,833
singlet/doubletsinglet
Overlap geneRad51c
Upstream gene0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e
Downstream geneTex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793, Msi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141G15.T7 (MSMg01no141_g15.b1)MSMg01-141G15.TJ (MSMg01no141_g15.g1)
ACCAG346293AG346294
length1,1501,228
length of high quality
(start - end)
621 (88 - 708)623 (99 - 721)
definitionCHROMAT_FILE: MSMg01no141_g15.b1 PHD_FILE: MSMg01no141_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:47 2005CHROMAT_FILE: MSMg01no141_g15.g1 PHD_FILE: MSMg01no141_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTTTCTTTTTTTNACACTGGGCGCTATAGACTCCTATAGGGAGAGGATC
CGCGGAATTCTGCTCCTGGGAAATTCCCATTTAGACTTAACCAAAAATAT
AGAAAAAAAACTGGATCCCCTTTAAAAATTTTTTTCCGCTGTTTTTTGAG
ACAGGGTTTTTCTGTGTAGCCCTGGCTATCTTGGAACTCACTCTGTAGTC
CAGGCTGGCTTCAAACTCAGAATTTCACCTGCCTCTGTCTCCCAAGTGCT
GGGATCAAAGGCAGGTACCATCATGCCTAGACTGAACTTTTTAAAGTCAC
TATGACCTTGCTTTCAACAGAATAAAAAAAAAAACAAAAAACAACATAAA
GCTCAACAATGAGAAAAATTTCAAAATTTCAGAATAGATTTACAGAAGTT
TTATTTTTTTAGCATAGCCTGTGAAGTGAAATTTATGTATTTATGCAGTT
TTTTAAAGAAATCTATGTAGCCCCGGTCAGCCTCTACCTCCTAGTGCTGA
GATTATAGGCATGAGTCATTATACCTTCCTTCTGCATGATTCGCCAGCAC
ATTTATCTGTGCCCAGGGCCTGTGGAAGGTAGAAGAGGGCATTGGATCCT
TTGGAACTGGTTACACATGGTTCTGAGCTGCCATATGGTTGCTGCTGGGA
ACTGAACTGCGTGAGAGCAGCCATTGAGCCATCTCTCCAGTCCTCTTTTT
TGTTTTTTGTTTTTGTTTGTTTGATTGTCTTGAAACAGATCTTCTCTGTT
CTATGCCTTGTCTTGTTTTCTTACTATATTGTCGTATTCTGATCTTTAAT
CTGTATTCTCCCATCTATTATGTCTTTGTATTATATGTCTTATTTCCTAT
TTTTTATTTTCCCTGGTTATTTACTAGTTGTTATCTACTCTTCTTTTACT
CTCTTTTTTTTCAATTTCAATCTCTACATCTTTCATCTTATTATCTTTTT
GTTTCTTTTTGTCTTCTTCTTTTCTTATTATTTTATTTATTCATCTTTCC
TCTTTTCTAACATTTCTTTCTCTTTTTTCCTTCTCCTTATATTTTTTCTT
TCATATTCTTCTTACTTTTTCTTCTTCTTCTTCTCAATATTTATCTCTCT
TATCTTTTATATATCTCTTTCAATCCATTTTTTCATTTTTTCACATTTCA

NCCCTCTCTTTTTTTAACATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCTAAAGAGCCAAGGNTAC
ACATAGAGAAACCCTGTCTTACCTTCAAAACAAACCAAAAACCCAACTGG
CATAAGAATAAGTATAGCTGCCGGGCGTGGTGGCGCATGCCTTTAATCCC
AGCACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTG
GTTTACAAAGTGAGTTCCAGGACAGTCAGGGCTATATAGAGAAACTGTGC
CTTGAAACAAAAAAGGAGGGTGTGGGGCGGGGGAAGAAGAATAGGTATAG
CTCAATAGAATAGAATTCAAAAATAAATGTTTGGGGCTGGCGAGATGGCT
CAGTGGTTAAGAGTTTTTACTGCTCTTCCGAAGGTCCCGAGTTCAAATCC
CAGCAACCACATGGTGGCTTACAACCATCTGTAACAAGATCTGATGCTCT
CTTCTGGAATATCTGAGGACAGCTACAATGTTCTTACATATAATAAATAA
ATCTTTAAAAATAAATAAATAAATAAATGTATTTGTGATCAACAGATATT
TCAATCTTAAGAATATACAATGAATATACAATATTTTGAAATGTGAATAG
CATATGTGTGCAAAATAAGTAATTAAGTGGAGGGCAGGGAAAGAAGCAGC
TTTGGGGGGCTAAAGAGATGGCTCAGTGGTCAAGAGCCCTGACTGTTCTT
CCGGAGGTCCTGAAGTTTATTCCCAGCACCCACATGGTGTCTCAAAACCA
TTTGAAATGCGATCTGATGCCCTCTTCTGGTGTGTCTCAAGATAAAGACT
GTGCACCTCTTTTAATTAATTTTATAATTTTTTTATTTTATTTTTATCTA
ATTTCTTATTTATTATTTTTTTTCTTTTATCTAGTTTTTTATTTGGCTTA
AATTTCTAATATTGCTACAGTTTTATTTTTGTATAATCAATATCATCTAA
TGTTTCTTTTTTTATAAATTTATTCCTTTTTTTGGATTTTTCTCTACACC
ATATCTTTTTGGTTTATCCTTGTTCCTTCTTCTTTTCTGTTTTCTTTTCT
TTTATTAATTATCTTTGTCACTTTATTTCTTTTTTTTCTCTTCTATTCTT
TCTATTTTCTTATTTTCTTATTTTCTTTCTTAATATCTATATCTTCTTCA
CTTCATATTTATTATCTTATATTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_g15.g1 MSMg01no141_g15.g1 CHROMAT_FILE:
MSMg01no141_g15.g1 PHD_FILE: MSMg01no141_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:47 2005
         (623 letters)



>mm_chr11_87210011_87211033
          Length = 1023

 Score = 1100 bits (569), Expect = 0.0
 Identities = 609/631 (96%), Gaps = 18/631 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacatagagaaaccctgtctta---ccttcaaaacaaaccaaaaacccaactggcataa 57
           |||||||||||||||||||||||   |   ||||||||||||||||  ||||||||||||
Sbjct: 203 acacatagagaaaccctgtcttaaaaca--caaaacaaaccaaaaaaacaactggcataa 260

                                                                       
Query: 58  gaataagtatagctgccgggcgtggtggcgcatgcctttaatcccagcactcaggaggca 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaataagtatagctgccgggcgtggtggcgcatgcctttaatcccagcactcaggaggca 320

                                                                       
Query: 118 gaggcaggcggatttctgagttcgaggccagcctggtttacaaagtgagttccaggacag 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggcaggcggatttctgagttcgaggccagcctggtttacaaagtgagttccaggacag 380

                                                                       
Query: 178 tcagggctatatagagaaactgtgccttgaaacaaaaaaggagggtgtggggcgggggaa 237
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 tcagggctatatagagaaactgtgccttgaaacaaaaaaggagggtgcggggcgggggaa 440

                                                                       
Query: 238 gaagaataggtatagctcaatagaatagaattcaaaaataaatgtttggggctggcgaga 297
           |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaa---taggtatagctcaatagaatagaattcaaaaataaatgtttggggctggcgaga 497

                                                                       
Query: 298 tggctcagtggttaagagttttt-----actgctcttccgaaggtcccgagttcaaatcc 352
           ||||||||||||||||||          ||||||||||||||||||||||||||||||||
Sbjct: 498 tggctcagtggttaagag-----cgccgactgctcttccgaaggtcccgagttcaaatcc 552

                                                                       
Query: 353 cagcaaccacatggtggcttacaaccatctgtaacaagatctgatgctctcttctggaat 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cagcaaccacatggtggcttacaaccatctgtaacaagatctgatgctctcttctggaat 612

                                                                       
Query: 413 atctgaggacagctacaatgttcttacatataataaataaatctttaaaaataaataaat 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 atctgaggacagctacaatgttcttacatataataaataaatctttaaaaataaataaat 672

                                                                       
Query: 473 aaataaatgtatttgtgatcaacagatatttcaatcttaagaatatacaatgaatataca 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 aaataaatgtatttgtgatcaacagatatttcaatcttaagaatatacaatgaatataca 732

                                                                       
Query: 533 atattttgaaatgtgaatagcatatgtgtgcaaaataagtaattaagtggagggcaggga 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 atattttgaaatgtgaatagcatatgtgtgcaaaataagtaattaagtggagggcaggga 792

                                          
Query: 593 aagaagcagctttggggggctaaagagatgg 623
           |||||||||||||||||||||||||||||||
Sbjct: 793 aagaagcagctttggggggctaaagagatgg 823


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)