Query= MSMg01no141_h05.b1 MSMg01no141_h05.b1 CHROMAT_FILE:
MSMg01no141_h05.b1 PHD_FILE: MSMg01no141_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:51 2005
(404 letters)
>mm_chr11_38310370_38311172
Length = 803
Score = 766 bits (396), Expect = 0.0
Identities = 402/404 (99%), Gaps = 1/404 (0%)
Strand = Plus / Minus
Query: 1 gactctgttagctgctcagcacaaactcatggagaagctgcgcatatgatagccattggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 gactctgttagctgctcagcacaaactcatggagaagctgcgcatatgatagccattggt 544
Query: 61 tcatctctatgttatcaccccagaaatttttttttttactttacttacaatgaaaatggt 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tcgtctctatgttatcaccccagaaatttttttttttactttacttacaatgaaaatggt 484
Query: 121 gaactagaggcaacccaggcaaacacctttgccccataaaggtgacctctttagcggtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gaactagaggcaacccaggcaaacacctttgccccataaaggtgacctctttagcggtga 424
Query: 181 tttacaaacaatgcttgaaaattactatatgaaggagtttctaaaacatattttcatttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tttacaaacaatgcttgaaaattactatatgaaggagtttctaaaacatattttcatttt 364
Query: 241 gtcaaaataacataaatcccagcacacacactgaaaatcctatagactagtatgaagaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gtcaaaataacataaatcccagcacacacactgaaaatcctatagactagtatgaagaag 304
Query: 301 ggaatttgtttaaatgcacatatattttaacattttccatatttaatatttaaacaacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ggaatttgtttaaatgcacatatattttaacattttccatatttaatatttaaacaacaa 244
Query: 361 gcagatcctttatgaatatggaaaaatggagtgctgtttatatc 404
|||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 243 gcagatcc-ttatgaatatggaaaaatggagtgctgtttatatc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 803
Length adjustment: 9
Effective length of query: 395
Effective length of database: 794
Effective search space: 313630
Effective search space used: 313630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no141_h05.g1 MSMg01no141_h05.g1 CHROMAT_FILE:
MSMg01no141_h05.g1 PHD_FILE: MSMg01no141_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:51 2005
(707 letters)
>mm_chr11_38191773_38192879
Length = 1107
Score = 1282 bits (663), Expect = 0.0
Identities = 698/711 (98%), Gaps = 5/711 (0%)
Strand = Plus / Plus
Query: 1 agagcaggtcttgatggatatcaaccagctat-gcgttatcaagttgtagtaagagtagc 59
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 198 agagcaggtcttgatggatatcaaccagctatggc-atatcaagttgtagtaagagtagc 256
Query: 60 catagcctcttc---tttttttacggcgaaataaggcaacccagtaggggaaaagagtct 116
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 catagcctcttcttttttttttacggcgaaataaggcaacccagtaggggaaaagagtct 316
Query: 117 caaatgcaggcaacagagtcagagacagcaactgttcctgttgttaggatttccacaata 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 caaatgcaggcaacagagtcagagacagcaactgttcctgttgttaggatttccacaata 376
Query: 177 aaaatatgctacataactctaacattcatagagatggcctcagtcaggccaatgcaggcc 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaaatatgctacataactctaacattcatagagatggcctcagtcaggccaatgcaggcc 436
Query: 237 tcctggtcagtggttcaggaataataccttttaaaactttatttttgtggttattatgat 296
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 437 tcctggtcagtggttcaggaataataccttttaaaactttatttttgcggttattatgat 496
Query: 297 tataaaggtatctcaactgtacagtctttaaattctatttaaaaaaaaaaaacctccttc 356
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 497 tataaaggtatctcaactgtacagtctttaaattctattttttaaaaaaaaccctccttc 556
Query: 357 ctgccacatcctacatctccacctgtctcacagcaggcctactctaaatctagacacagg 416
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 557 ctgccacatcctacatctccacctgtctcgcaacaggcctactctaaatctagacacagg 616
Query: 417 taagatacatgtgccccagttccactaactgctgggtctccagcaagcccagcagccatg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 taagatacatgtgccccagttccactaactgctgggtctccagcaagcccagcagccatg 676
Query: 477 atctctaccctgctccatcttccttccagtccatatctccatctgcaatcaaggatttgt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 atctctaccctgctccatcttccttccagtccatatctccatctgcaatcaaggatttgt 736
Query: 537 aacccaaactgtagcacacagttctgcctgctttttgggaggtctgtagctatctgaagc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aacccaaactgtagcacacagttctgcctgctttttgggaggtctgtagctatctgaagc 796
Query: 597 aaccagtctcagagccttactacttccagggactaccatgccagccaaatccagagtcaa 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 aaccagtctcagagccttactacttccagggactaccatgccagccaaatccagagtcaa 856
Query: 657 taagaaggtagcagaactgaacaaaaaattctcacctgaggaataccaaat 707
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 taagaaggtagcagaactgaacaaaaaattctcacctgaggaataccaaat 907
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1107
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1097
Effective search space: 764609
Effective search space used: 764609
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
