MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-142A18
Chromosome	11 (Build37)
Map Location	85,208,154 - 85,208,550
singlet/doublet	singlet
Overlap gene	Bcas3
Upstream gene	Acaca, LOC100043671, Aatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d
Downstream gene	Tbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Acaca (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:107476 MGI:108451
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043671 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043671
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 92 ESTs

name	Aatf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56321 MGI:1929608
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lhx1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16869 MGI:99783
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mrm1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217038 MGI:2443470
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC022224 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:192970 MGI:2652816
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ggnbp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217039 MGI:2387356
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pigw (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70325 MGI:1917575
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Znhit3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:448850 MGI:3051596
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Car4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12351 MGI:1096574
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Usp32 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237898 MGI:2144475
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668794 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668794
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 8 Proteins pseudo : _no_value

name	LOC234848 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:234848
definition	note : ribosomal protein L13 pseudogene pseudo : _no_value

name	1700125H20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73634 MGI:1920884
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 3 Proteins

name	Appbp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66884 MGI:1914134
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D630032N06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:654810 MGI:3603817
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 3 ESTs

name	Ppm1d (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53892 MGI:1858214
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bcas3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:192197 MGI:2385848
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tbx2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21385 MGI:98494
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tbx4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21387 MGI:102556
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668751 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668751
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 8 Proteins pseudo : _no_value

name	Brip1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237911 MGI:2442836
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668803 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668803
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 42 ESTs, 5 Proteins pseudo : _no_value

name	Ints2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70422 MGI:1917672
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Thrap1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:327987 MGI:3029632
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Acaca (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125656172 GeneID:107476 MGI:108451
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acetyl-Coenzyme A carboxylase alpha transcript_id : NM_133360.2

name	LOC100043671 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149262012 GeneID:100043671
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 92 ESTs product : hypothetical protein LOC100043671 transcript_id : XM_001481024.1

name	Aatf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9790012 GeneID:56321 MGI:1929608
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : apoptosis antagonizing transcription factor transcript_id : NM_019816.1

name	Lhx1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130719 GeneID:16869 MGI:99783
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LIM homeobox protein 1 transcript_id : NM_008498.2

name	Mrm1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21703863 GeneID:217038 MGI:2443470
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) transcript_id : NM_145433.1

name	BC022224 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802498 GeneID:192970 MGI:2652816
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC022224 transcript_id : NM_177564.4

name	Ggnbp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:139949212 GeneID:217039 MGI:2387356
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gametogenetin binding protein 2 transcript_id : NM_153144.2

name	Pigw (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117647260 GeneID:70325 MGI:1917575
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidylinositol glycan anchor biosynthesis, class W transcript_id : NM_001077636.1

name	Pigw (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117647258 GeneID:70325 MGI:1917575
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidylinositol glycan anchor biosynthesis, class W transcript_id : NM_027388.2

name	Znhit3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385710 GeneID:448850 MGI:3051596
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, HIT type 3 transcript_id : NM_001005223.2

name	Car4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6671677 GeneID:12351 MGI:1096574
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : carbonic anhydrase 4 transcript_id : NM_007607.1

name	Usp32 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126032298 GeneID:237898 MGI:2144475
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin specific peptidase 32 transcript_id : NM_001029934.1

name	1700125H20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94390268 GeneID:73634 MGI:1920884
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 3 Proteins product : RIKEN cDNA 1700125H20 gene, transcript variant 1 transcript_id : XM_126139.5

name	Appbp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892350 GeneID:66884 MGI:1914134
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : amyloid beta precursor protein (cytoplasmic tail) binding protein 2 transcript_id : NM_025825.3

name	Ppm1d (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560441 GeneID:53892 MGI:1858214
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein phosphatase 1D magnesium-dependent, delta isoform transcript_id : NM_016910.2

name	Bcas3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801917 GeneID:192197 MGI:2385848
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : breast carcinoma amplified sequence 3 transcript_id : NM_138681.3

name	Tbx2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:120407038 GeneID:21385 MGI:98494
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : T-box 2 transcript_id : NM_009324.2

name	Tbx4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27777678 GeneID:21387 MGI:102556
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : T-box 4 transcript_id : NM_011536.1

name	Brip1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:30795234 GeneID:237911 MGI:2442836
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : BRCA1 interacting protein C-terminal helicase 1 transcript_id : NM_178309.1

name	Ints2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:86476083 GeneID:70422 MGI:1917672
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : integrator complex subunit 2 transcript_id : NM_027421.2

name	Thrap1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124286861 GeneID:327987 MGI:3029632
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thyroid hormone receptor associated protein 1 transcript_id : NM_001080931.1

name	Acaca (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125656173 CCDS:CCDS25185.1 GeneID:107476 MGI:108451
definition	EC_number : 6.4.1.2 GO_function : GO:0003989 - acetyl-CoA carboxylase activity [Evidence IMP]; GO:0005524 - ATP binding [Evidence IEA]; GO:0009374 - biotin binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : acetyl-CoA carboxylase 265 product : acetyl-Coenzyme A carboxylase alpha protein_id : NP_579938.2

name	LOC100043671 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149262013 GeneID:100043671
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001481074.1

name	Aatf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9790013 CCDS:CCDS25186.1 GeneID:56321 MGI:1929608
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005730 - nucleolus [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007155 - cell adhesion [Evidence IMP]; GO:0040016 - embryonic cleavage [Evidence IMP]; GO:0042985 - negative regulation of amyloid precursor protein biosynthesis [Evidence IDA]; GO:0007346 - regulation of progression through mitotic cell cycle [Evidence IMP]; GO:0042254 - ribosome biogenesis and assembly [Evidence IMP] codon_start : 1 note : traube product : apoptosis antagonizing transcription factor protein_id : NP_062790.1

name	Lhx1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678688 CCDS:CCDS25187.1 GeneID:16869 MGI:99783
definition	GO_component : GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0001706 - endoderm formation [Evidence IMP]; GO:0010003 - gastrulation (sensu Mammalia) [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : LIM homeo box protein 1 product : LIM homeobox protein 1 protein_id : NP_032524.1

name	Mrm1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:89337263 GeneID:217038 MGI:2443470
definition	GO_function : GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0008173 - RNA methyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006396 - RNA processing [Evidence IEA] codon_start : 1 product : mitochondrial rRNA methyltransferase 1 homolog protein_id : NP_663408.2

name	BC022224 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:109715818 GeneID:192970 MGI:2652816
definition	GO_function : GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 product : short-chain dehydrogenase/reductase protein_id : NP_808232.2

name	Ggnbp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:139949213 GeneID:217039 MGI:2387356
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IEA] codon_start : 1 note : dioxin inducible factor 3; gametogenin binding protein 2 product : zinc finger protein 403 protein_id : NP_694784.2

name	Pigw (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117647261 GeneID:70325 MGI:1917575
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016407 - acetyltransferase activity [Evidence IEA]; GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006506 - GPI anchor biosynthesis [Evidence IEA] codon_start : 1 product : phosphatidylinositol glycan, class W protein_id : NP_001071104.1

name	Pigw (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117647259 GeneID:70325 MGI:1917575
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005789 - endoplasmic reticulum membrane [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016407 - acetyltransferase activity [Evidence IEA]; GO:0008415 - acyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006506 - GPI anchor biosynthesis [Evidence IEA] codon_start : 1 product : phosphatidylinositol glycan, class W protein_id : NP_081664.2

name	Znhit3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:52421332 CCDS:CCDS25189.1 GeneID:448850 MGI:3051596
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : myosin head domain containing 1 product : thyroid hormone receptor interactor 3 protein_id : NP_001005223.1

name	Car4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6671678 CCDS:CCDS25190.1 GeneID:12351 MGI:1096574
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004089 - carbonate dehydratase activity [Evidence IEA]; GO:0048503 - GPI anchor binding [Evidence IEA]; GO:0016829 - lyase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006730 - one-carbon compound metabolism [Evidence IEA] codon_start : 1 note : CA IV product : carbonic anhydrase 4 protein_id : NP_031633.1

name	Usp32 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126032299 GeneID:237898 MGI:2144475
definition	GO_function : GO:0008233 - peptidase activity [Evidence IEA] codon_start : 1 product : ubiquitin specific protease 32 protein_id : NP_001025105.1

name	1700125H20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38091535 GeneID:73634 MGI:1920884
definition	codon_start : 1 product : hypothetical protein LOC73634 isoform 1 protein_id : XP_126139.2

name	Appbp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313248 CCDS:CCDS25193.1 GeneID:66884 MGI:1914134
definition	GO_component : GO:0030659 - cytoplasmic vesicle membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008017 - microtubule binding [Evidence ISS] GO_process : GO:0046907 - intracellular transport [Evidence ISS]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : amyloid beta precursor protein (cytoplasmic tail) binding protein 2 protein_id : NP_080101.1

name	Ppm1d (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560442 CCDS:CCDS25194.1 GeneID:53892 MGI:1858214
definition	GO_component : GO:0008287 - protein serine/threonine phosphatase complex [Evidence IEA] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0004724 - magnesium-dependent protein serine/threonine phosphatase activity [Evidence ISS]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0000086 - G2/M transition of mitotic cell cycle [Evidence IMP]; GO:0006470 - protein amino acid dephosphorylation [Evidence IEA]; GO:0009617 - response to bacterium [Evidence IMP] codon_start : 1 exception : mismatches in translation product : protein phosphatase 1D magnesium-dependent, delta isoform protein_id : NP_058606.2

name	Bcas3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:37620155 CCDS:CCDS25195.1 GeneID:192197 MGI:2385848
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 exception : mismatches in translation product : breast carcinoma amplified sequence 3-like protein_id : NP_619622.2

name	Tbx2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:120407039 GeneID:21385 MGI:98494
definition	GO_component : GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016564 - transcriptional repressor activity [Evidence IDA] GO_process : GO:0007569 - cell aging [Evidence IDA]; GO:0007275 - development [Evidence IEA]; GO:0030879 - mammary gland development [Evidence IGI]; GO:0016481 - negative regulation of transcription [Evidence IDA]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : T-box 2 protein_id : NP_033350.2

name	Tbx4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27777679 CCDS:CCDS25196.1 GeneID:21387 MGI:102556
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0030326 - embryonic limb morphogenesis [Evidence IMP]; GO:0030324 - lung development [Evidence IMP]; GO:0002009 - morphogenesis of an epithelium [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : mismatches in translation product : T-box 4 protein_id : NP_035666.1

name	Brip1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30795235 CCDS:CCDS25197.1 GeneID:237911 MGI:2442836
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004003 - ATP-dependent DNA helicase activity [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006281 - DNA repair [Evidence IEA]; GO:0006139 - nucleobase, nucleoside, nucleotide and nucleic acid metabolism [Evidence IEA]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence ISS]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 product : BRCA1 interacting protein C-terminal helicase 1 protein_id : NP_840094.1

name	Ints2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:86476084 CCDS:CCDS25198.1 GeneID:70422 MGI:1917672
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] codon_start : 1 product : integrator complex subunit 2 protein_id : NP_081697.2

name	Thrap1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124286862 GeneID:327987 MGI:3029632
definition	GO_component : GO:0000119 - mediator complex [Evidence ISS] GO_function : GO:0004872 - receptor activity [Evidence IEA]; GO:0003713 - transcription coactivator activity [Evidence ISS] GO_process : GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence ISS] codon_start : 1 note : thyroid hormone receptor associated protein, 240 kDa subunit; mediator of RNA polymerase II transcription, subunit 13 product : mediator of RNA polymerase II transcription, subunit 13 homolog protein_id : NP_001074400.1

name	LOC668794 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149262014 GeneID:668794
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 8 Proteins product : similar to Ribosomal protein L18 pseudo : _no_value transcript_id : XR_034954.1

name	D630032N06Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149262015 GeneID:654810 MGI:3603817
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 3 ESTs product : RIKEN cDNA D630032N06 gene transcript_id : XR_035464.1

name	LOC668751 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149262016 GeneID:668751
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 8 Proteins product : similar to ribosomal protein L21 pseudo : _no_value transcript_id : XR_034957.1

name	LOC668803 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149262017 GeneID:668803
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 42 ESTs, 5 Proteins product : similar to ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G pseudo : _no_value transcript_id : XR_034958.1

clone name	MSMg01-277D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-277C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-102A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-188H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-365I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158K13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-193J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-164D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-088G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374A16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-547N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-232B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-142A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-275H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-232K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-311H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-213D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478P20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-215E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-217C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-413N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-191N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-497E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463K19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-054O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-187I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-163O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-204B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008M08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012B04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164P08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-190I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077C19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206N17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225P08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083D18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222B04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229N09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123N17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120J18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247D09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301E17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-315B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324A01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-200O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084K07
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-142A18.T7 (MSMg01no142_a18.b1)	MSMg01-142A18.TJ (MSMg01no142_a18.g1)
ACC	AG346759	AG346760
length	1,237	1,207
length of high quality (start - end)	399 (142 - 540)	615 (86 - 700)
definition	CHROMAT_FILE: MSMg01no142_a18.b1 PHD_FILE: MSMg01no142_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:11 2005	CHROMAT_FILE: MSMg01no142_a18.g1 PHD_FILE: MSMg01no142_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:11 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	CATTTCTTTNNNNATCATTTGGCGCTATAGACTCCTATAGGGAGAGGATC CGCGGAATTCTTTCTTAGTATGAACTCCTATAAAAGTGTGTTCTGTAAGT GTGTGATTTCTCTGCACCCTTTCATGAGGATTCCCCCCCGCCCCTGCGCT CACTCTCCATGTTAGGGCCGGGGAGCTACAAGACTGTTCTGCAATGTTCA CGTTTGGTCATTACAGGCAATTATCTTTCCAGAACTGTTACTCTCAGTAA ATCATTCCAATCTATCAGCTACGTTCTTTTGTGATTACAAAAATGGCTAC TAAGAACAGTAAAAACAAACAAACAAAAAACCAGGACCTCCCAGACTGCA ATATTCTGTAAATAAGGGAATAATAAAGTTGTGAGCAACTTTGGAAGTCA TCTCTTCTTTTATAAACAAAGATCAACCACTTTGTCCATTCCCTTGGTAA GGTCAGATTCAATGCTTGGACATAAAGACATTAGTATTCTGTTTGTCCAA ATGGCAAAGGGGGTATGTTAGTGTGCATCAAGTTTTTATAAAATTGCCTT TCAACTACTGGTTGATCTGATGATTATATTATTATATATTTATTAAGTAT CAATTTTCTAGGTTGATTGTGTTATGTGTTATTTATTATATTTCTTTTTT TTTGTTTTTTTTTTTTTATGTTTTATTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTCTTTTTTTTTTTTGTTCTTTTTTTTTTTTATTCTTTTATTT TTTTTTTATTTTTTTTTTACTTATTTTTTTTTCTTTTTTTTTTTTTTTTT ATTTTTCTCATCTTATCTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTA TTTATTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTT TCTTTTTATTTTTTCTTTTTCTTTTATTTTTCTATTCTTTATTTTTTTTT TATTTTTTTTTGTTCTTCTCTTTTTTTTTTCTTTTTTTAATTTTTTTTTT TTCTTTTTTTTTTTTTTTTTATTTCTTTTATTTTATTTTTTCTTTTATTA TTTTTTTTTTTTTTTTTTCTTTTCTTTCTTTTTCTTTTATTTTTTTTTAT TTTTTTTCTTTTTTTTATATTCTTTTTTTTATTTCTTTTATTTTTTGCTT TTCTATTCTTATCTATTTACTTTATATTTATTTTTTCCTTTTTTTTTACT TTATCTTTTACGTTTTATCCTATTGTATTTCTCCTTT	CGAGTATTNNTNTAGCAGTGAGNCTGGGGCCGCXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXCCTTTGGACCTTAGAAAGAGCAGTTGG TGCTCTTAACCGCTCAGCCATCTCACCAGCGCCGCCTTATACTTTGACAC TATAGTCCATCATTGAAGGAAGTCAGGACTGGAACCCAAGCAGGGCAGGA ACCTGGGGATAGGAGCTGATGCAACTATCATGGTGGTGGTGGGGTGCTTA CTGGCTTGTGTCTCATGGCATGCTCAGACTGCTTTCTTATAGAATCCAGG ATCACCACCAGCCGAAGGATGGCACCATTCATCAATGAGCTGGCTCTCCT CCATCAGTCAGTAGTTAGGAAAATGCTCTACAGGCTTACCCGAAGGAAGC CTGATTTATACAAGCATTTTCTCTACTGAGGTTTCCTCCTTTCAGAGTTT TTTAGCTTGTGTCAAGTTGATATAAAACTAGCTAGTACAGCGGGGAAGGG GATTGTCATATTGGAGATTAAATACAGGGTCGGAAACATGCTAGGCCAAT ACCCCAACCAATCAGCCCTGTCTATATTTTGTAATCCTATCTATCTATCT ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT CTATCTAAAATTTTTTTCTTTCTTTTTCTTTCTTTCTTCCTTTTTTTTTT TTTTTTTGAGACAGGCTTTCTCTGTATAGCCCTGGCTATCCTGCAATTCA TTCTGTTATACCAGCCTGTCCTCCAATTCATATATTTGCCTGCCTCTGTC CTCCCTAGTGCTGTTATTATAGTCTTGTTTCACCTCTTTCCATCTCCTTG TAATTATTTTGTTTGTGTTTCTGTTTCTTTTCTTTTCTTTCTCTTCTTCT TTTTTTTCTTTTTTTTCTTTTTTTTTTTTTTCTTTTTCTTTTTTATTCCT CTCTTTTTTCTTTTATTTCTATCTCTCTTACTTCTTCTCTTTTCCTCTTT TTCTTCTAATTTTTTTTCTCATTTCCATTTCCTCTATCTTTTCATCTTCC TCTCTATACTTTTTTTTACCTTATTTTATCTTCCTTTTTCTTTCTTTTGT TTTATCTAATTCTCATTTATCCTCTCTTTTCTATTTATTAGTTTATTCTC GTTTTTCTTTCATTCTTTCTATTTCTCTCTATTTTTTTCTTCCTCTTCTT TTTTATT
quality values	Open. Hide. 11 11 11 12 9 11 9 23 3 0 0 0 0 3 6 7 7 7 7 6 8 8 8 8 8 6 6 6 6 8 15 17 8 8 8 8 11 12 15 18 31 29 24 28 24 23 23 37 37 47 50 47 47 50 50 50 43 43 42 42 42 38 53 53 53 31 31 31 31 31 30 37 23 23 9 9 9 10 9 9 9 12 19 17 21 13 13 10 10 15 26 32 33 36 36 38 50 50 50 50 50 50 50 50 50 36 53 31 31 31 31 31 21 19 8 8 7 8 8 8 8 8 10 10 15 19 21 10 10 9 9 9 9 10 13 14 14 12 12 9 11 17 21 31 33 33 33 39 41 44 36 36 50 50 50 50 47 57 47 47 36 47 42 40 48 48 48 48 57 59 57 48 48 39 41 42 48 48 68 68 68 68 68 68 68 68 68 68 68 68 68 57 59 43 44 47 57 57 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 57 57 59 57 57 57 68 68 68 68 68 68 68 68 68 57 57 59 48 48 52 57 57 57 68 68 68 68 51 50 50 50 50 50 57 57 57 57 57 52 52 52 57 57 57 57 57 68 68 68 68 68 68 57 57 57 57 57 59 59 68 68 68 68 68 68 68 68 57 57 57 52 52 52 57 59 59 59 59 59 59 59 57 57 57 52 52 52 52 52 57 57 57 57 57 57 59 59 57 57 57 57 57 57 50 50 48 48 48 48 48 50 50 44 43 42 42 30 33 28 28 28 40 40 47 47 43 43 44 44 46 43 43 43 59 59 59 59 68 59 59 59 59 59 59 59 59 59 48 48 48 48 48 57 57 57 57 59 59 59 59 59 59 57 57 57 57 57 48 48 48 48 48 48 57 57 48 48 48 48 57 57 57 53 53 59 59 33 33 13 10 10 13 13 10 11 9 12 12 12 23 30 41 41 48 48 48 43 43 43 43 47 48 48 50 53 53 48 48 48 48 43 47 43 43 43 43 41 43 37 40 46 46 43 43 30 24 12 21 21 30 31 36 30 35 28 41 28 30 30 44 32 30 28 32 28 30 30 42 44 47 54 47 47 46 46 37 37 37 43 43 42 44 44 44 44 57 43 37 37 43 37 43 44 43 26 18 13 20 13 22 22 31 20 27 27 36 27 36 42 46 40 41 28 21 21 13 12 12 12 13 18 15 12 12 12 19 27 38 41 30 15 13 13 11 11 18 21 17 11 11 11 21 26 23 20 20 20 24 28 22 17 17 15 15 15 25 24 21 12 15 8 11 8 10 10 8 12 8 8 8 12 19 22 11 12 11 12 10 12 12 8 8 8 19 13 13 9 9 10 11 12 12 12 16 16 24 24 34 34 19 19 12 11 11 11 12 13 16 10 10 9 12 8 8 8 8 8 8 8 8 10 17 17 19 10 10 8 10 8 8 8 8 6 6 8 8 10 8 13 15 14 14 12 12 12 9 9 9 17 12 10 10 8 8 8 10 13 13 13 8 10 9 9 8 8 8 7 7 10 8 10 13 15 12 10 12 13 22 18 22 19 13 10 10 10 10 14 19 21 18 18 14 16 10 10 13 19 17 11 9 9 9 9 9 14 20 30 20 15 17 10 10 8 10 8 6 8 7 7 7 13 13 16 15 12 11 17 10 18 16 11 11 8 8 8 8 10 10 10 10 11 16 26 20 22 14 13 12 10 8 8 10 10 10 12 10 9 9 8 8 8 8 8 8 8 10 11 10 9 8 8 8 10 10 8 8 10 19 19 20 20 24 24 25 18 14 14 12 10 8 8 8 8 8 10 10 10 8 8 8 8 8 10 10 10 8 8 8 8 10 10 11 8 8 8 11 11 11 14 10 14 9 10 12 11 14 10 12 16 18 16 20 17 15 9 9 9 15 13 21 13 10 10 10 12 10 10 10 13 16 22 11 12 10 8 8 8 8 10 15 10 13 10 12 12 26 22 25 12 11 10 10 10 9 11 11 10 9 12 16 22 14 12 8 8 8 8 15 10 10 9 12 12 14 13 14 10 8 8 8 6 8 8 10 12 12 10 8 8 12 14 14 9 8 8 10 10 8 7 10 12 12 12 10 10 10 8 8 8 6 6 10 8 8 8 8 8 10 9 13 13 9 9 8 8 8 8 12 9 9 10 10 8 8 7 7 8 9 9 9 9 9 14 14 14 14 17 20 24 30 21 10 8 6 6 8 8 14 13 13 8 8 6 6 10 10 11 24 19 22 22 14 8 8 8 10 10 10 13 19 23 23 23 28 30 26 30 21 14 10 10 10 10 10 9 14 10 10 9 13 10 8 10 13 15 16 12 12 10 8 8 8 9 9 10 9 10 8 8 8 8 10 15 13 18 11 11 11 13 10 12 8 8 8 8 8 8 9 10 9 9 12 9 12 12 9 9 8 10 6 6 8 8 12 12 12 12 12 17 18 9 9 9 10 10 12 12 13 12 12 11 11 19 26 32 31 23 13 11 11 10 11 18 18 30 32 17 15 6 6 6 6 8 10 10 10 9 9 12 13 15 15 13 13 11 21 13 15 17 15 13 7 6 8 8 9 13 16 8 8 6 6 8 8 9 10 10 10 8 10 8 8 8 8 6 8 14 9 6 12 8 10 10 11 15 8 8 9 8 8 10 10 8 8 8 11 8 11 9 9 9 8 11 16 12 9 9 8 10 8 8 8 6 10 6 7 8 8 11 12 19 11 9 9 9 9 15 15 10 11 9 6 6 8 8 10 8 9 9 10 13 10 9 9 8 8 8 8 8 8	Open. Hide. 8 8 8 8 9 9 9 3 0 0 3 0 3 6 6 6 6 6 6 6 6 3 0 3 6 6 8 7 11 8 8 11 8 8 8 12 12 21 19 19 10 10 10 23 23 33 36 36 36 36 35 35 35 37 37 37 35 35 35 35 36 36 36 41 41 50 50 47 41 27 23 9 9 11 12 12 11 9 11 11 10 19 19 22 22 12 19 27 37 44 53 57 57 57 57 42 43 43 43 47 47 53 53 53 47 47 47 47 53 53 35 23 16 9 11 9 11 18 21 33 33 36 36 33 33 47 41 46 43 30 24 20 11 12 12 17 18 24 30 33 33 33 33 44 53 53 50 53 42 42 42 43 43 43 53 53 53 53 53 53 53 53 53 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 57 57 59 59 57 57 57 68 68 68 68 68 68 68 68 57 57 57 57 57 59 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 68 62 62 62 62 62 62 62 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 62 62 62 62 62 62 62 68 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 44 62 39 39 27 39 27 43 44 62 62 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 45 52 52 62 62 62 62 62 62 62 62 62 52 52 52 62 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 57 57 59 59 52 52 52 57 57 57 57 57 57 57 57 57 57 57 59 59 59 57 57 52 52 57 57 57 57 57 52 52 57 57 57 52 57 52 52 52 57 52 52 52 52 38 38 17 17 17 38 38 59 59 57 52 52 52 52 50 50 43 52 52 59 59 54 54 52 59 52 54 57 59 59 59 57 57 59 59 54 59 59 68 68 68 68 68 68 59 59 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 39 37 37 57 57 57 59 57 59 59 59 59 68 68 59 59 57 57 57 59 59 68 68 68 68 68 59 57 54 48 48 57 57 57 57 57 59 59 59 59 59 59 53 53 53 53 53 50 41 41 39 37 37 41 37 23 19 13 13 19 23 44 41 42 42 42 48 28 30 35 30 30 30 36 48 48 46 59 59 47 32 32 20 18 17 31 30 41 41 39 39 40 39 34 22 10 8 8 8 9 8 19 22 19 19 13 17 11 12 8 11 8 8 10 13 19 11 11 10 8 8 8 8 8 8 9 9 9 10 10 10 10 10 10 22 13 10 10 10 16 15 12 10 10 10 10 10 14 15 18 18 24 23 15 10 10 10 10 9 9 8 8 8 8 8 8 8 8 8 10 8 14 11 10 10 8 8 8 8 8 8 10 15 13 15 12 12 9 9 8 8 8 8 8 11 8 8 8 9 13 8 8 6 6 10 8 11 9 12 11 11 10 10 13 10 8 8 8 8 8 8 8 8 7 6 8 8 8 8 10 15 8 8 8 8 8 10 8 6 6 8 6 8 7 8 7 7 8 13 10 14 17 14 24 23 10 8 8 8 12 8 8 8 8 8 10 8 8 8 8 8 10 13 15 10 10 11 11 11 11 10 12 8 8 8 8 8 8 10 10 10 10 10 9 7 12 8 8 9 9 10 9 9 14 12 11 12 13 14 20 20 13 18 19 20 14 17 14 10 10 9 9 10 10 14 10 10 10 10 10 12 21 19 10 10 10 10 10 16 10 8 8 8 13 13 8 7 6 8 10 10 10 10 10 10 7 7 8 10 12 8 8 8 8 12 14 9 8 8 7 6 8 8 8 8 8 8 10 10 9 9 9 10 11 11 18 11 9 8 8 8 6 6 8 8 10 13 15 8 9 8 8 8 8 8 8 8 11 10 11 16 22 23 18 11 8 8 7 6 10 8 8 8 8 8 13 14 8 8 8 8 10 10 10 13 10 10 10 8 8 8 8 8 8 10 8 8 8 8 6 6 8 8 8 8 6 6 8 8 12 10 8 8 10 8 8 8 8 6 6 8 8 8 8 13 12 12 10 6 6 8 8 9 8 8 8 8 8 8 8 7 6 8 8 9 9 9 12 12 9 9 9 9 8 8 8 10 8 8 9 12 12 9 8 8 8 8 8 10 8 8 8 8 8 8 8 15 15 12 12 8 12 8 8 8 10 9 9 9 11 11 11 12 13 11 10 7 7 9 9 9 10 8 7 7 10 10 8 6 6 8 10 10 10 10 8 8 6 6 8 8 11 8 8 6 8 8 8 8 10 12 18 13 12 12 11 12 8 8 7 6 8 8 6 6 8 8 15 10 8 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no142_a18.b1 MSMg01no142_a18.b1 CHROMAT_FILE:
MSMg01no142_a18.b1 PHD_FILE: MSMg01no142_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:11 2005
         (399 letters)



>mm_chr11_85207954_85208752
          Length = 799

 Score =  729 bits (377), Expect = 0.0
 Identities = 392/397 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccctgcgctcactctccatgttagggccggggagctacaagactgttctgcaatgttcac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 597 ccctgcgctcactctccatgttagggccggggagctacaagactgttctgcaatattcac 538

                                                                       
Query: 61  gtttggtcattacaggcaattatctttccagaactgttactctcagtaaatcattccaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gtttggtcattacaggcaattatctttccagaactgttactctcagtaaatcattccaat 478

                                                                       
Query: 121 ctatcagctacgttcttttgtgattacaaaaatggctactaagaacagtaaaaacaaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 477 ctatcagctacgttcttttgtgattacaaaaatggctactaagaacaataaaaacaaaca 418

                                                                       
Query: 181 aacaaaaaaccaggacctcccagactgcaatattctgtaaataagggaataataaagttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aacaaaaaaccaggacctcccagactgcaatattctgtaaataagggaataataaagttg 358

                                                                       
Query: 241 tgagcaactttggaagtcatctcttcttttataaacaaagatcaaccactttgtccattc 300
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 357 tgagcaactttggaagtcatctcttctaatataaacaaagatcaaccactttgtccattc 298

                                                                       
Query: 301 ccttggtaaggtcagattcaatgcttggacataaagacattagtattctgtttgtccaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ccttggtaaggtcagattcaatgcttggacataaagacattagtattctgtttgtccaaa 238

                                                
Query: 361 tggcaaagggggtatgttagtgtgcatcaagttttta 397
           ||||||||||||||||| |||||||||||||||||||
Sbjct: 237 tggcaaagggggtatgtgagtgtgcatcaagttttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information