Query= MSMg01no143_g07.b1 MSMg01no143_g07.b1 CHROMAT_FILE:
MSMg01no143_g07.b1 PHD_FILE: MSMg01no143_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:57 2005
(399 letters)
>mm_chr11_64161964_64162761
Length = 798
Score = 741 bits (383), Expect = 0.0
Identities = 395/399 (98%), Gaps = 1/399 (0%)
Strand = Plus / Minus
Query: 1 caggtctgctatctgtcacctggcatttccttaccctcctcttgccacaagctcgccctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 caggtctgctatctgtcacctggcatttccttaccctcctcttgccacaagctcgccctg 539
Query: 61 cactcttccaccactggtaagagtctgtgctgtgccaaaaccctcaacacctcaggctat 120
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 538 cactcttccaccactggtaagagtctgtgctgtgccaaagccctcaacacctcaggctgt 479
Query: 121 gtatggtctctccgggctgaaagagcccagatgaaggtgtcttcggcattcggggaatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gtatggtctctccgggctgaaagagcccagatgaaggtgtcttcggcattcggggaatct 419
Query: 181 gtccttccatactcaggacaggcagtctgtctcaggtctagagtgagctggaaatgatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gtccttccatactcaggacaggcagtctgtctcaggtctagagtgagctggaaatgatgg 359
Query: 241 ttgctgccttgttcttgcaacagcatttctttgtggtccttacatgttctcagtcatttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttgctgccttgttcttgcaacagcatttctttgtggtccttacatgttctcagtcatttc 299
Query: 301 tagatatgtctgaaatttaaacagacaaagcttcaggaccatacctcaaccacacattac 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 298 tagatatgtctgaaatttaaacagacaaagcttcaggaccatacctcaacca-atattac 240
Query: 361 ttttttaaaaaatgtagttagttagttgtgtgagtgggg 399
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ttttttaaaaaatgtagttagttagttgtgtgagtgggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 798
Length adjustment: 9
Effective length of query: 390
Effective length of database: 789
Effective search space: 307710
Effective search space used: 307710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_g07.g1 MSMg01no143_g07.g1 CHROMAT_FILE:
MSMg01no143_g07.g1 PHD_FILE: MSMg01no143_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:57 2005
(523 letters)
>mm_chr11_64019704_64020625
Length = 922
Score = 915 bits (473), Expect = 0.0
Identities = 513/531 (96%), Gaps = 10/531 (1%)
Strand = Plus / Plus
Query: 1 ccaagagatatttcacttaataggcagccaactcaaactagataatgaggaaaaattttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ccaagagatatttcacttaataggcagccaactcaaactagataatgaggaaaaattttg 251
Query: 61 ggctattcatgtcattgactttagcttgtatttatttagtctctatagtattgtacagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ggctattcatgtcattgactttagcttgtatttatttagtctctatagtattgtacagac 311
Query: 121 tcctgtgtatgagtgtgtcatagacttcaaacaggccgttcttaaataagctttgtctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tcctgtgtatgagtgtgtcatagacttcaaacaggccgttcttaaataagctttgtctcc 371
Query: 181 atgctacctcctaccctaacttgtaagtccacatattctctaacccaatcttctgaacta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atgctacctcctaccctaacttgtaagtccacatattctctaacccaatcttctgaacta 431
Query: 241 tgatattttccaaaataggctatatatcttttgtttctttccaaattctttacagatgtc 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tgaaattttccaaaataggctatatatcttttgtttctttccaaattctttacagatgtc 491
Query: 301 atttacttttctgggtgcatgtccctgcccatccttaacgcccaattttttactccctcc 360
|||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 492 atttacttttctggatgcatgtccctgcccatccttaatgctgaattttttactccctcc 551
Query: 361 tgtaaccagggagcactg-ccccccc--------cccgaattttgtacagcctaaggctg 411
|||||||||||||||||| ||||||| |||||||||| || ||||||||||||
Sbjct: 552 tgtaaccagggagcactgtcccccccacaccccccccgaattttatatagcctaaggctg 611
Query: 412 tagagatgaactcagagaaccctcagatggcagtaactgcagtctttagaagcttaatgt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tagagatgaactcagagaaccctcagatggcagtaactgcagtctttagaagcttaatgt 671
Query: 472 tactccatttgatctgaagctgtgtaataggcccttgaatctcttctatca 522
||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 672 tactccatttgatctgaagctgtgtaataggcc-ttgaatcccttctatca 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 922
Length adjustment: 10
Effective length of query: 513
Effective length of database: 912
Effective search space: 467856
Effective search space used: 467856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
