Query= MSMg01no143_h24.b1 MSMg01no143_h24.b1 CHROMAT_FILE:
MSMg01no143_h24.b1 PHD_FILE: MSMg01no143_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:05 2005
(495 letters)
>mm_chr11_23040927_23041821
Length = 895
Score = 859 bits (444), Expect = 0.0
Identities = 479/496 (96%), Gaps = 10/496 (2%)
Strand = Plus / Plus
Query: 5 gaattctaactggcaccggttgagcttaggtttgcgataatagcatagcagggatttcac 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaactggcacaggttgagcttaggtttgcgataatagcatagcagggatttcac 264
Query: 65 aacagtaaaaaatgagatccgatgactgtggttccaaaagtaaactgtagcagtgtgtgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacagtaaaaaatgagatccgatgactgtggttccaaaagtaaactgtagcagtgtgtgg 324
Query: 125 aattaactgttaactttcaacaaccttgatcaatagcgcgctttccagaaaggtgaagaa 184
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 aattaactgttaactttcaacaaccttgatcaatagcgcgctttgcagaaaggtgaagaa 384
Query: 185 ttaagcgctttttctctataagaattactacacagtttgaagtcccgaaggagcagcagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttaagcgctttttctctataagaattactacacagtttgaagtcccgaaggagcagcagc 444
Query: 245 tcttacagtgacagggcatctgtacatttccactactgcagccagctgggttgtgtttgt 304
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcttacagtgacagggcatttgtacatttccactactgcagccagctgggttgtgtttgt 504
Query: 305 tggcagcaagggctgtgacctttctcacagcgtagtattatccttgagacgtttatgagt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tggcagcaagggctgtgacctttctcacagcgtagtattatccttgagacgtttatgagt 564
Query: 365 atctatacccc-----ccatacgagttctggagggacaggctcaggaacagaaaactgaa 419
|||||| ||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 565 atctat-----gtgtgccatacgagttctggagagacaggttcaggaacagaaaactgaa 619
Query: 420 agaaattgaaagggaggagctagaggacttataggccttgaaagactgtctcagacatct 479
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 620 agaaattgaaagggaggagctagaggacttagaggccttgaaagactgtctcagacatct 679
Query: 480 ggtacaccgtacttag 495
||||||| ||||||||
Sbjct: 680 ggtacacagtacttag 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_h24.g1 MSMg01no143_h24.g1 CHROMAT_FILE:
MSMg01no143_h24.g1 PHD_FILE: MSMg01no143_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:05 2005
(537 letters)
>mm_chr11_23170081_23171017
Length = 937
Score = 1023 bits (529), Expect = 0.0
Identities = 535/537 (99%)
Strand = Plus / Minus
Query: 1 atagtgtaagtgactgctcatgggctcacacattaacacaaccaggctcctaacaaatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 atagtgtaagtgactgctcatgggctcacacattaacacaaccaggctcctaacaaatta 678
Query: 61 gaagcttggatgctatcaagcttcctaccaccctctaggagttacaagttttcagccaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gaagcttggatgctatcaagcttcctaccaccctctaggagttacaagttttcagccaaa 618
Query: 121 tatcaagtactgtctgtcacagatacattctatatagagggtttaaacataactggtgtg 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tatcaagtactgtctgtcagagatacattctatatagagggtttaaacataactggtgtg 558
Query: 181 ttacttaaaggagcagcaagacaaacccatgggtttattttcaattttagccccaccctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttacttaaaggagcagcaagacaaacccatgggtttattttcaattttagccccaccctt 498
Query: 241 atgcagtttctatttctactaatttaaagataaacttttgtgcacagtcaaaatacaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atgcagtttctatttctactaatttaaagataaacttttgtgcacagtcaaaatacaaat 438
Query: 301 gcatgttgcaatctgtatctacctttcaggtattccttacagacatggaagctgtaatta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gcatgttgcaatctgtatctacctttcaggtattccttacagacatggaagctgtaatta 378
Query: 361 catttgtgaaaaagttaaataacagataccactttcaatccattttatccctcccactgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 catttgtgaaaaagttaaataacagataccactttcaatccattttatccctcccactgc 318
Query: 421 ttatgcactctaaacagtcagcaacatgtaagaatttttaatgctccgggatttactacc 480
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 317 ttatgcactctaaacagtcagcaacatgtaagaatttataatgctccgggatttactacc 258
Query: 481 taaaattattactatgaccaattagtgtggataggcaggagaaagaaaaggaaccaa 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 taaaattattactatgaccaattagtgtggataggcaggagaaagaaaaggaaccaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
