BAC Information

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BAC

Clone NameMSMg01-143K04
Chromosome11 (Build37)
Map Location 66,790,094 - 66,790,250
singlet/doubletsinglet
Overlap genenone
Upstream geneDnahc9, Gm879, LOC668323, A530088H08Rik, 9130409J20Rik
Downstream geneA730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8, Myh13, Gas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143K04.T7 (MSMg01no143_k04.b1)MSMg01-143K04.TJ (MSMg01no143_k04.g1)
ACCAG347930AG347931
length702690
length of high quality
(start - end)
207 (73 - 279)157 (74 - 230)
definitionCHROMAT_FILE: MSMg01no143_k04.b1 PHD_FILE: MSMg01no143_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:14 2005CHROMAT_FILE: MSMg01no143_k04.g1 PHD_FILE: MSMg01no143_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATAATTTGCGGCGCTAAACGACTACTATATTCAGAGAGACCGCGGAAT
TCTTCCTCATCTCCCAAAATAACAATTTGAGGTTGTAACCCTGCATATTT
CAGAAGGAGACCTTATTTGAAGACAGGGTCTTCACAAAGATACCAAAGTT
AAAATGGGATCATTGAAATGGACTTGAATATGATATGACTCATGGCCTTT
CAACAAGGGGAAGTTAGACACAAAGATCTACACGAGAGGAAGGTGTCATA
TGAACACACACAGAAGCCCAAGACAAGGACCTGGAGCAGAGTCTCTCTCA
CAGTCCTCGAAAGGAGATTATTCTACAGACTGGTTTTATCTCGCACCTTG
ATTACAAGCTTTGAACTTCTGGAACTTCAGCAAAACCATTCAGTTTGTTA
TGCTCTATACGGACCCCCCCCTTTTTAGCATAAGTGACCTGAACAGCTAC
AACAACTATTTTTCCTTTGTCACATTAATTAACCGTTTTTGCCAATGCCC
AACTGAACATTGATTGCATTACTTAAAGTCATGTGTCCTTGCCTCAGCAT
TTAAATCAACGCCCGTTCATCTTCGACAACAATCTATTCCAGCATACACC
TGTCTGATTTTTAAACTCTATTCAACATTTTTCTCCTCACCCACCATTCA
CTTTTACCTATTTACACCTGGTCTCCCAATACTATAATATTTTTGCTCTT
TA
CCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATCTATGTTCAGTATTGGGGATGGGGT
GGATGCAAGAAGCTCTGATGCCAGGTGATCTGTGCAGAACATTGGTAAGA
GGACCAATTACAGACTGCTGGACCTTATCCTCATGATTGACAGAGAAAGG
GATGTGCTACTAGATCAGTGATGGGATCAGTATGTAGAGTTAAACAAACG
TACTACCATTAAATTATCATCATCATCATCAATGTGTGTGGATGCTGTGC
ATGTTGGCTAGGCTTATGTCTCAAAGTGTGTATGGAGGTTAGAGGACTTC
TTTGTGGAGTCGCTTCTCTCCATGGTATCTGTGTCTAGATATTGTGTCTC
CTGCCCTATGCATTACCCCCCCTTTATATGATAAGTCATCTTGCTAGCCT
CCATGCGAAGTTTTTATGACCCAGCTATGCACCTCGCTTCTTGCTCCGCT
TCAAATTTTCCCGTTTACAATTTCCCCACTTTTTATTCCCCTCCCCCTTT
TTATTTTCTTCCCCCCCTTTTCTACCTTCTCACCTACCTTCCCAACTTCC
ATTATTTTATTTTTAACCATAGGATCTTTCCGCCACTCTACTACCTTTCC
CCCCTCTATCCTATATACATATACCACATATCTACCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_k04.g1 MSMg01no143_k04.g1 CHROMAT_FILE:
MSMg01no143_k04.g1 PHD_FILE: MSMg01no143_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:15 2005
         (157 letters)



>mm_chr11_66789894_66790450
          Length = 557

 Score =  281 bits (145), Expect = 2e-80
 Identities = 154/157 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctatgttcagtattggggatggggtggatgcaagaagctctgatgccaggtgatctgt 60
           |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 357 atctgtgttcagtattggggatggtgtggatgcaagaagctctgatgccaggtgatctgt 298

                                                                       
Query: 61  gcagaacattggtaagaggaccaattacagactgctggaccttatcctcatgattgacag 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gcagaacattggcaagaggaccaattacagactgctggaccttatcctcatgattgacag 238

                                                
Query: 121 agaaagggatgtgctactagatcagtgatgggatcag 157
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 agaaagggatgtgctactagatcagtgatgggatcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 557
Length adjustment: 8
Effective length of query: 149
Effective length of database: 549
Effective search space:    81801
Effective search space used:    81801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)