BAC Information

Click to search

BAC

Clone NameMSMg01-143K08
Chromosome11 (Build37)
Map Location 102,515,843 - 102,516,054
singlet/doubletsinglet
Overlap genenone
Upstream geneArl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik
Downstream genePsmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143K08.T7 (MSMg01no143_k08.b1)MSMg01-143K08.TJ (MSMg01no143_k08.g1)
ACCAG347938AG347939
length722692
length of high quality
(start - end)
213 (72 - 284)341 (70 - 410)
definitionCHROMAT_FILE: MSMg01no143_k08.b1 PHD_FILE: MSMg01no143_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:15 2005CHROMAT_FILE: MSMg01no143_k08.g1 PHD_FILE: MSMg01no143_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACTTGATCCGCGGAATTA
TACCTTCTTTTCCCAAACATCCACAGAGCAAGGCCTGCTCATCCCAGAGG
TGGCCTGTCTCTCTGCAGCTGCGAGAGAGAGGAGTCTGGGCTGGGCACGC
CTGAGTGCTTCAACTTTCCCCAGATATTCCAACTCTGCTTCCATATTTAA
ACATCCATCTGGTCTTTGTCCCATGTATTTTCCTCTTCCACTTTATAATG
TGAGTGTCCTTCTGAGGAAAAGCCAATCCATGTGTTTCTTTTTTTTTTAA
CATTCATTTATCCACTATTTTTATTCACACTGCATTCTACTCTCTCACTC
TCCACTACTAATAAATCAGCCCTTACAAACCCTAAGACATAATAAAATAA
AGTAGAAAGAAGGATTGTGCCCCACCCCCCCTATTTTTTATATATTTAAC
CCTTCTTATCTTTATTATTTTTTTCAATTCCTTCATATATTTTCCCAACT
TTTTACCTATTACCACAACATTCCTTACTTGGAATACCTTATACTTTTAA
TTTTTTGTGCCAACACACTAATTTAATTATTCTCTTACATACTATATTCA
TACCAATTTCCTCCTTTTTTCTATCTTCTTTTATACCTACTCTCTTTCTT
ATTTCCCTACCCCCACACATATATTTCTTATTTTCTCAATTTATATCCCT
TAATATAAATATTTTTTTTCTT
ATGAAGCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTATCACATGTCTTTTCGTGTGCTTGCTTT
AGCAGAACATCCTTTTACCTGTGTCTGCTTCAGCTAAATGTTCCTTCACA
AGTCTGCCTTAGTCCTCCACCTTTGCCCACTTTAGCTAACTGTTCCTTCA
CGTGTTTACCCCAGCAAAACACCATCCAACCGACTTTCCAAAGAACCTTT
AAGCATCCACTTCAGAGCACTAGCTGCTCTTCCTGAAGACCTGGATTCAG
TTACTAGCATCCACTTGATGGCTCACAAATATTGCAACTCCAGTTCCAGG
GATTCGATGTCGATGCCTTCTTCTGATCTACTCAGGCAATACAGGCATGT
GGTTCACAGACAACACCCTCGTTGCTAAATACACATATAAAATACAAATG
AATCTTTTTACTATTTAAAAGTTAAAACTAACACCAGGAACATAGGTACG
GAGATGTTTCATCAGCTAACATTTCTCACTATGTTTTGACCCCCCCGCGT
TTGTTGGCAATTGACCTCTAGATCCCTGGAACACCACCTAGCCGTCTCAA
ATGTTGTACTTTATTCCCCAGTTCCCAAATTTCACCTTTTTAAGAACAAA
CATTTCACCATCACTTATATATCGCTCGAAATGTGGTTTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_k08.b1 MSMg01no143_k08.b1 CHROMAT_FILE:
MSMg01no143_k08.b1 PHD_FILE: MSMg01no143_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:15 2005
         (213 letters)



>mm_chr11_102515643_102516254
          Length = 612

 Score =  397 bits (205), Expect = e-115
 Identities = 211/213 (99%), Gaps = 1/213 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagagcaaggcctgctcatcccagaggtggcctgtctctctgcagctgcgagagagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagagcaaggcctgctcatcccagaggtggcctgtctctctgcagctgcgagagagag 260

                                                                       
Query: 61  gagtctgggctgggcacgcctgagtgcttcaactttccccagatattccaactctgcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtctgggctgggcacgcctgagtgcttcaactttccccagatattccaactctgcttc 320

                                                                       
Query: 121 catatttaaacatccatctggtctttgtcccatgtattttcctcttccactttataatgt 180
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 321 catatttaaacatccatctggtctttgtcccatgtattttcct-ttccactttaaaatgt 379

                                            
Query: 181 gagtgtccttctgaggaaaagccaatccatgtg 213
           |||||||||||||||||||||||||||||||||
Sbjct: 380 gagtgtccttctgaggaaaagccaatccatgtg 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 612
Length adjustment: 9
Effective length of query: 204
Effective length of database: 603
Effective search space:   123012
Effective search space used:   123012
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)