Query= MSMg01no144_d06.b1 MSMg01no144_d06.b1 CHROMAT_FILE:
MSMg01no144_d06.b1 PHD_FILE: MSMg01no144_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:58 2005
(670 letters)
>mm_chr11_92653645_92654714
Length = 1070
Score = 1151 bits (595), Expect = 0.0
Identities = 632/651 (97%), Gaps = 11/651 (1%)
Strand = Plus / Minus
Query: 5 gaattctccaagcaggtccattgaatggactggccagttggatctcctgctacaatcggg 64
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gaattctccaagcaggtcgatcgaatggactggccagttggatctcctgctacaatcggg 592
Query: 65 tacatagccctgtatggtctccttagtagataccagaacccgagaagctgatcccatgag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tacatagccctgtatggtctccttagtagataccagaacccgagaagctgatcccatgag 532
Query: 125 taaagtacaggctgaactggatgggaccaaaatccttctgcataacaccgtagcgtctct 184
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 531 taaagtacaggctgaactggatgggaccaaaatccttctgcataacaccatagcgtctct 472
Query: 185 gttagagtgaggcaagaagcttgatgatttggtatgggaacacagttgaaagtcttctat 244
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gttaaagtgaggcaagaagcttgatgatttggtatgggaacacagttgaaagtcttctat 412
Query: 245 aaaactgccaggaatgaaactcatgctgtgcaatcatgtgacgtctgccacagaggccag 304
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 411 aaaactgccaggaatgaaactcatgctgtgcaatcatgtgacgtcggccacagaggccag 352
Query: 305 cactacactgtaaagtaggaaagatcaccttagccaacccatcttatttactgaattata 364
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 351 cactacactgtaaagtaggaaagatcactttagccaacccatcttatttactgaattata 292
Query: 365 ttttttcaagggcgtatcctgtatgacccactacctccaaaccacactttcagaaagctc 424
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ttttttcaagggtgtatcctgtatgacccactacctccaaaccacactttcagaaagctc 232
Query: 425 taaccagattgg-----------aaaaaaaaaaaaaaagcttagaatctgttattatttt 473
|||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 231 taaccagattggaaaaaaaaaaaaaaaaaaaaaaaaaagcttagaatctgttattatttt 172
Query: 474 tcctggccagtcagagtttattattatactgtttgagtttactgagaggtggatacccca 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 tcctggccagtcagagtttattattatactgtttgagtttactgagaggtggatacccca 112
Query: 534 aggagattcctagagtaatcggctcatggatttctagttatgttcttatccatgcttaag 593
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 111 aggagattcctagagtaatcggctcatggatttctacttatgttcttatccatgcttaag 52
Query: 594 gatctccagtctctggggcataaagaagacttccaaatgggtccagataat 644
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 gatctccagtctctggggcataaagaagacttccaaatgggtccagataat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_d06.g1 MSMg01no144_d06.g1 CHROMAT_FILE:
MSMg01no144_d06.g1 PHD_FILE: MSMg01no144_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:58 2005
(634 letters)
>mm_chr11_92521718_92522751
Length = 1034
Score = 1207 bits (624), Expect = 0.0
Identities = 630/632 (99%)
Strand = Plus / Plus
Query: 1 cacctgccattgcaaattgaattcaaggaggacagtgaaattcaggaccaatcatttatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacctgccattgcaaattgaattcaaggaggacagtgaaattcaggaccaatcatttatc 260
Query: 61 aggatgataaagtgacacagttgctaactcagttctcagaacactccacggttttcatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggatgataaagtgacacagttgctaactcagttctcagaacactccacggttttcatta 320
Query: 121 ataccaatgcttgggggataaaacagcaaaatgattgattaaatcctttattttccctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataccaatgcttgggggataaaacagcaaaatgattgattaaatcctttattttccctgc 380
Query: 181 atatgtagactttctcagcttcttagtatttcaggatagattttgtttgcttcccttttc 240
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 atatgtagactttatcagcttcttagtgtttcaggatagattttgtttgcttcccttttc 440
Query: 241 gttctgtaactgaaaagtacactcctttgtgaatatcctgctgttgaaagcgatactgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttctgtaactgaaaagtacactcctttgtgaatatcctgctgttgaaagcgatactgtt 500
Query: 301 ttctttatcattcatttatatataaataaattatgtatacctatataaataactcttcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctttatcattcatttatatataaataaattatgtatacctatataaataactcttcta 560
Query: 361 ggaaagattggaagttaggtctgacgttaaggcttccaattttagatgagtcaaggttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaaagattggaagttaggtctgacgttaaggcttccaattttagatgagtcaaggttat 620
Query: 421 cattttctgatagggaacacccctagaaacaaataatagtttatttcagcatatagagat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cattttctgatagggaacacccctagaaacaaataatagtttatttcagcatatagagat 680
Query: 481 tcctatgcaagtgatcttaattactgattggtgatacatctcctgagtaacagacaatga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcctatgcaagtgatcttaattactgattggtgatacatctcctgagtaacagacaatga 740
Query: 541 taccgttgttaaaaaattttaatctagccaggcgtggtggcgcatgccccagcactcggg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taccgttgttaaaaaattttaatctagccaggcgtggtggcgcatgccccagcactcggg 800
Query: 601 aggcagaggcaggcagatttctgagttcgagg 632
||||||||||||||||||||||||||||||||
Sbjct: 801 aggcagaggcaggcagatttctgagttcgagg 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
