BAC Information

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BAC

Clone NameMSMg01-144I17
Chromosome11 (Build37)
Map Location 90,709,364 - 90,709,876
singlet/doubletsinglet
Overlap genenone
Upstream genePctp, Tmem100, LOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1
Downstream geneLOC638903, EG664976, Kif2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144I17.T7 (MSMg01no144_i17.b1)MSMg01-144I17.TJ (MSMg01no144_i17.g1)
ACCAG348591AG348592
length719713
length of high quality
(start - end)		672 (45 - 716)446 (76 - 521)
definitionCHROMAT_FILE: MSMg01no144_i17.b1 PHD_FILE: MSMg01no144_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:24 2005CHROMAT_FILE: MSMg01no144_i17.g1 PHD_FILE: MSMg01no144_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATGCTTGTCACTTTCAATAAATTCTCCTTAGAAGGCTTTTCTACT
TCACTGGAGATTCTTCCAGGAAAGGTGAAAGGTCTTCTACCTCAGCTACA
TATATCTCCTGCTAGTTGGGCCCAAAGTCTCTCTAGCCAGCCTCTTGAAA
TTCAAGACCAAATTTTAAATATGTCTTGAGAGTGTGTGGGAAGAAAACCT
GTGGGAAACAGCATGGTCAATAAGCTGTAAATTAGCAGGGAGGAAAGGAG
AGCTGCACAGGAAGAGAGCTCTTGAGGTTTGTAGCGCTTCCTTTTAAGGC
TCCTGATAAGAAGTTAGGGATGCTCTGCAGGGAAACTACACAAGGCCAAG
GAAGATGGTTCAAAGAACCAGAGAAGACTGTCTCCAAGCTTATGTTAGTC
CAGGAGTAACTTGTGTCCCCACCAGAAGTAATAAAGGCCTAGCAATGCAT
CCAACAGAGGGCAGACTGCTCTAAAAGGAAGCGCTCACTAGTAGTGAAGG
AAGAGTATCCACCACCTAAGAGCTGTCTGATTTCACCTTAGAAAGTGTGA
AGGACTAAATAAAAAGTTGGAAAAGCAGAAAGTGTGAAGGCAAGCCCCTA
AGTATGTTTCTGTATAATTTTATTATAAAATACAAAAGGGAAATCCAAGG
AAAACCTATATATAGAATN

CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGTTCTATACCCCATTTT
TTGATTGGGTTGTTTTTGGTGGTTAGCTTCTTGAGTTCTTAATATATTTT
GGATATTAGCCCTCTTTCTGATGTGGGGTTAGTGAAGATTTTTTTCCCCA
ATCTGTAGGTTGCCAGTTTGTCCTATTGACTATATCCTTTGCCTTATAGA
AGCTTTCCAGCTTCACGAGGTCTCATGTATCAATTCTTGATCTCAGAGCC
TGAGTCATTGGAGTTCTGTTTAGGAGATTTCCCCTTGTGCCAATGGGTCC
TGACACTGCTACTAATGCTATGGTGTGCTTGCAGACATAAGCCTAGCATG
GCTGCCCCCTGAGAGGCCCAACACACAGCAGAGTCAGCTAACCAATGGAC
AGAAGCTGGGGACCCCTGTGGTTGAATTGGGGAAAAGCTGGAAGATGTTG
AGGGGGAGGATGGCCCCATGGTAAGACCATCTTTCTCAACTGATCCATAC
TCCCAAGATCTCTTAGATACTGAGCCCCCAACCAGGTCAGTATACACAGG
CTGATATGATGTCCCCTGACACATATACTGCAGAGAACTGTCACATCTGT
CCTTAGTGATAGAACATGCATCTAATTCTTGAGAGACACGAGGCCCCTTA
TAGTACGGAGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_i17.b1 MSMg01no144_i17.b1 CHROMAT_FILE:
MSMg01no144_i17.b1 PHD_FILE: MSMg01no144_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:24 2005
         (672 letters)



>mm_chr11_90708805_90709876
          Length = 1072

 Score =  938 bits (485), Expect = 0.0
 Identities = 506/513 (98%)
 Strand = Plus / Minus

                                                                        
Query: 160  aagaccaaattttaaatatgtcttgagagtgtgtgggaagaaaacctgtgggaaacagca 219
            ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct: 1072 aagaccaaattttaactatgtctcgagagtgtgtgggaagaaaacctgtgggaaacagct 1013

                                                                        
Query: 220  tggtcaataagctgtaaattagcagggaggaaaggagagctgcacaggaagagagctctt 279
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1012 tggtcaataagctgtaaattagcagggaagaaaggagagctgcacaggaagagagctctt 953

                                                                        
Query: 280  gaggtttgtagcgcttccttttaaggctcctgataagaagttagggatgctctgcaggga 339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952  gaggtttgtagcgcttccttttaaggctcctgataagaagttagggatgctctgcaggga 893

                                                                        
Query: 340  aactacacaaggccaaggaagatggttcaaagaaccagagaagactgtctccaagcttat 399
            |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 892  aactacacaaggccaaggaagatggttcaaaggaccagagaaaactgtctccaagcttat 833

                                                                        
Query: 400  gttagtccaggagtaacttgtgtccccaccagaagtaataaaggcctagcaatgcatcca 459
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 832  gttagtccaggagtaacttgtgtccccaccagaagtaataaaggcccagcaatgcatcca 773

                                                                        
Query: 460  acagagggcagactgctctaaaaggaagcgctcactagtagtgaaggaagagtatccacc 519
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772  acagagggcagactgctctaaaaggaagcgctcactagtagtgaaggaagagtatccacc 713

                                                                        
Query: 520  acctaagagctgtctgatttcaccttagaaagtgtgaaggactaaataaaaagttggaaa 579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712  acctaagagctgtctgatttcaccttagaaagtgtgaaggactaaataaaaagttggaaa 653

                                                                        
Query: 580  agcagaaagtgtgaaggcaagcccctaagtatgtttctgtataattttattataaaatac 639
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652  agcagaaagtgtgaaggcaagcccctaagtatgtttctgtataattttattataaaatac 593

                                             
Query: 640  aaaagggaaatccaaggaaaacctatatataga 672
            |||||||||||||||||||||||||||||||||
Sbjct: 592  aaaagggaaatccaaggaaaacctatatataga 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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