Query= MSMg01no146_f03.b1 MSMg01no146_f03.b1 CHROMAT_FILE:
MSMg01no146_f03.b1 PHD_FILE: MSMg01no146_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:57 2005
(724 letters)
>mm_chr11_28811279_28812402
Length = 1124
Score = 1292 bits (668), Expect = 0.0
Identities = 710/724 (98%)
Strand = Plus / Minus
Query: 1 tgtgttgcccctgtactttcaggccttcagtgtttattttcttggctaacccaaagcgct 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 tgtgttgctactgtactttcaggccttcagtgtttattttcttggctaacccaaagcgct 774
Query: 61 ctggcatctgtggagttttccagcactcttcttctgcatcatagcttccagaattacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ctggcatctgtggagttttccagcactcttcttctgcatcatagcttccagaattacaaa 714
Query: 121 ccctgtccttccttgagtctgggtacccattccagcacctagacacaacctgtggagggt 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 cccggtccttccttgagtctgggtacccattccagcacctagacacaacctgtggagggt 654
Query: 181 agagcctgccagggtccacaaggagctaagtgctgacatacttgtgtcaactttctcagg 240
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 653 agagcctgccagggtccacaaggagcgaagtgctgacatacttgcgtcaactttctcagg 594
Query: 241 tggaagttgatgctggctgcctgtccccaaaccctctcttgtttctaagagaaaacctgg 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 593 tggaagttgatgctggctgcctgtccccaaaccctcacttgtttctaagagaaaatctgg 534
Query: 301 cctttccactggtctgtggtaagaggttaggtatgtaaacagataggcaaagggagccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 533 cctttccactggtctgtggtaagaggttaggtatgtaaacagataggcagagggagccaa 474
Query: 361 tcagtttcatgacttctactgggcctcttgattgagccagagtgctgttttacttcagtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tcagtttcatgacttctactgggcctcttgattgagccagagtgctgttttacttcagtg 414
Query: 421 cacgacagctgacctactcaaactgtattcttccattcattcagaaggcatgtaggtgag 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 catgacagctgacctactcaaactgtattcttccattcattcagaaggcatgtaggtgag 354
Query: 481 catgtatgggtggtactgtggcagcaacagtgacacaagctgatatggccttagatgtca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 catgtatgggtggtactgtggcagcaacagtgacacaagctgatatggccttagatgtca 294
Query: 541 gggaggtagcctctcagatccctcaggcacagtgcttcattctgcactttaaaaacacca 600
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 293 gggaggtagcctctcagatccctcaggcacagcgcttcattctgcactttaaaaacacca 234
Query: 601 gcaaaaacttacagtgtaaagaggctttagactagcagttctcaacccatgggtggaaac 660
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 233 gcaaaaacttacagtgtaaagagtctttagactagcggttctcaacccatgggtggaaac 174
Query: 661 ccattcaggggttgcatatcgagtatcttgcatatcagatatttatattatgattcataa 720
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 173 ccattcagggcttgcatatcgaatatcttgcatatcagatatttatattatgattcataa 114
Query: 721 cagt 724
||||
Sbjct: 113 cagt 110
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 724
Length of database: 1124
Length adjustment: 10
Effective length of query: 714
Effective length of database: 1114
Effective search space: 795396
Effective search space used: 795396
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no146_f03.g1 MSMg01no146_f03.g1 CHROMAT_FILE:
MSMg01no146_f03.g1 PHD_FILE: MSMg01no146_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:57 2005
(671 letters)
>mm_chr11_28657123_28658193
Length = 1071
Score = 1253 bits (648), Expect = 0.0
Identities = 666/672 (99%), Gaps = 1/672 (0%)
Strand = Plus / Plus
Query: 1 cagcaacaatgtggcgatttcagaagctgaacacaaagtcctttctctgtgaaagcccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 cagcaacaatgtggcgatttcagaagctgaacacaaagtcctttctctgtgaaagcccct 259
Query: 61 tccacttcctttgtggatacttgtccatcaaattctaggtaatcaatctaggcattcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tccacttcctttgtggatacttgtccatcaaattctaggtaatcaatctaggcattcctt 319
Query: 121 gaggacctcctgtgacctcagctcttcagaatacatttaatcccccttcctaattctcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gaggacctcctgtgacctcagctcttcagaatacatttaatcccccttcctaattctcta 379
Query: 181 -aaatgccttacattcaacagtcctgatgaatactagttacggacaaactgcagagcaga 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taaatgccttacattcaacagtcctgatgaatactagttacggacaaactgcagagcaga 439
Query: 240 ctgagatttacataagatgcttgagcctctgtccaactctaatccttgttggtcctcaaa 299
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctgagacttacataagatgcttgagcctctgtccaactctaatccttgttggtcctcaaa 499
Query: 300 acagatatgaatcccttcacttggcaaacgcattgagcctcaatggtcagctagcttagc 359
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 500 acagatatgaatcccttcacttggcaaaagcattgagcctcaatggtcagctagcttagc 559
Query: 360 tgaattggtgagcttcagcttagtgagagatcctatttcaaaaaaataagaccaagaata 419
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgaattggtgagcttcagctcagtgagagatcctatttcaaaaaaataagaccaagaata 619
Query: 420 aatgaggaggacacctaactttgacacataaaatcacatgtgcatgaataaccacatatt 479
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aatgaagaggacacctaactttgacacataaaatcacatgtgcatgaataaccacatatt 679
Query: 480 catgtgcatacacataaacatgtacataaatatctatataaataaacatactttaataac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 catgtgcatacacataaacatgtacataaatatctatataaataaacatactttaataac 739
Query: 540 ataaaagtgaaaaaaattttcaaggttgagattcaagaccagttctctttattaatccac 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ataaaagtgaaaaaaattttcaaggttgagattcaagaccagttctctttattaatccac 799
Query: 600 taacatcaaacaaatcaaatgaaacaaatttgtagttaaggatatgatcaacttttattt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 taacatcaaacaaatcaaatgaaacaaatttgtagttaaggatatgatcaacttttattt 859
Query: 660 ccaaaattatta 671
| ||||||||||
Sbjct: 860 caaaaattatta 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
