Query= MSMg01no146_f05.b1 MSMg01no146_f05.b1 CHROMAT_FILE:
MSMg01no146_f05.b1 PHD_FILE: MSMg01no146_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:58 2005
(683 letters)
>mm_chr11_26113398_26114480
Length = 1083
Score = 1077 bits (557), Expect = 0.0
Identities = 574/581 (98%), Gaps = 3/581 (0%)
Strand = Plus / Minus
Query: 1 aaaccaaccctgagattccacctcataccagtcagaattgccaagatcaaaaattcaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 aaaccaaccctgagattccacctcataccagtcagaattgccaagatcaaaaattcaggt 522
Query: 61 agcagcagatgctggcgaggatgttgtgaaagaggaactagccagtagagaagccaagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 agcagcagatgctggcgaggatgttgtgaaagaggaactagccagtagagaagccaagag 462
Query: 121 gagaaacttccttggggaagtgtaagtgagcatgtgtttcataaagttagatttaaggta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gagaaacttccttggggaagtgtaagtgagcatgtgtttcataaagttagatttaaggta 402
Query: 181 gaatttggggaaacactaaaatctgtggtgagattgttaacaaccatcatatgtagggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gaatttggggaaacactaaaatctgtggtgagattgttaacaaccatcatatgtagggga 342
Query: 241 aaatgattccaacttgggatgaatctttcttttagaatggagtctccattgctggtggaa 300
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 341 aaatgattccaacttgggatgaatctttctgaaagaatggagtctccattgctggtggga 282
Query: 301 ttgcaagctggtacaagcactctggaaatcagtctggcagtggctcagaaaattggacat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttgcaagctggtacaagcactctggaaatcagtctggcagtggctcagaaaattggacat 222
Query: 361 agtactactggaagatccagcaatacctctcctgagcatataccc---agatgttccaat 417
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 221 agtactactggaagatccagcaatacctctcctgagcatatacccagaagatgttccaat 162
Query: 418 ttgtaataaggacacatgctccactatgttcatagcagccttatttataatagtcagaag 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ttgtaataaggacacatgctccactatgttcatagcagccttatttataatagtcagaag 102
Query: 478 ctggaaagaacccagatgtctctcaacagaggaatagatacagaaaatatggtacattta 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 ctggaaagaacccagatgtctctcaacagaggaatagatacagaaaatatggtacattta 42
Query: 538 cacaatggagtactactcagctattaaaaacaatgaattta 578
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 cacaatggagtactactcagctattaaaaacaatgaattta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_f05.g1 MSMg01no146_f05.g1 CHROMAT_FILE:
MSMg01no146_f05.g1 PHD_FILE: MSMg01no146_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:58 2005
(574 letters)
>mm_chr11_25942188_25943161
Length = 974
Score = 1071 bits (554), Expect = 0.0
Identities = 569/574 (99%), Gaps = 1/574 (0%)
Strand = Plus / Plus
Query: 1 gcttttaaccagtttcacagtatcttctatggttaaataaccatgtttgaagctgggttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcttttaaccagtttcacagtatcttctatggttaaataaccatgtttgaagctgggttg 260
Query: 61 gaagcagagatagtccctgatagaagtctcctctatcgtggatttcacagtagcatgtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagcagagatagtccctgatagaagtctcctctatcgtggatttcacagtagcatgtga 320
Query: 121 gtaaagtaaataagttaatagttttttcagttaacacattcatgagtaccaggtgaagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaaagtaaataagttaatagttttttcagttaacacattcatgagtaccaggtgaagga 380
Query: 181 gggtagctgagtaggctaaaacacaacatcaaaaagcccctgggggtcggtaatgctctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtagctgagtaggctaaaacacaacatcaaaaagcccctgggggtcggtaatgctctt 440
Query: 241 ttgagcaaggaaagtgggggtttcatgatattacccaatacttcattgtggacctacaga 300
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 ttgagcaaggaaagtgggggtttcatgataaaacccaatacttcattgtggacctacaga 500
Query: 301 gtatgaatttaaaaaattgaatccatgaccagatggccatgagaatgaatggaagtctgc 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 gtatgaatttaaaaaattgaatccatgaccagacggccatgagaatgaatggaagtctgc 560
Query: 361 aactgacaggggtagggaagtagagggtatcttcaggaaaagacagagacctgggataag 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 aactgacaggggtagggaagtagagggcatcttcaggaaaagacagagacctgggataag 620
Query: 421 ggacatacttaagaatcaatgggtgtctccttagatatgactcccagaattgggcacctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggacatacttaagaatcaatgggtgtctccttagatatgactcccagaattgggcacctg 680
Query: 481 gaacctgaagaggacagacaggttgttcttggtccttcctagagaagaacagcttaatcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaacctgaagaggacagacaggttgttcttggtccttcctagagaagaacagcttaatcc 740
Query: 541 catattgcataagtttgaatggtatatgagagat 574
||||||||||||||| ||||||||||||||||||
Sbjct: 741 catattgcataagtt-gaatggtatatgagagat 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
