Query= MSMg01no147_l03.b1 MSMg01no147_l03.b1 CHROMAT_FILE:
MSMg01no147_l03.b1 PHD_FILE: MSMg01no147_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:21 2005
(164 letters)
>mm_chr11_16060993_16061556
Length = 564
Score = 271 bits (140), Expect = 2e-77
Identities = 155/160 (96%)
Strand = Plus / Plus
Query: 1 ccactgtgaagttgggcactatttctcctagttatggtggtaactggccatccatagcat 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccactgtgaagttgggcactatttctcctagttatggtggtaactggccatccatagcac 260
Query: 61 catacactagttgaggtttccacagtgagagccttgacctagcagtgttaaaactccagt 120
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 261 catacactagttgaggtttccacagtgagagccttgacccagaagtgttaaaactccagt 320
Query: 121 aggtgggttggggatcagggagagggaggagggtatagtg 160
|||| ||||||||| |||||||||||||||||||||||||
Sbjct: 321 aggtaggttggggagcagggagagggaggagggtatagtg 360
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space: 86736
Effective search space used: 86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no147_l03.g1 MSMg01no147_l03.g1 CHROMAT_FILE:
MSMg01no147_l03.g1 PHD_FILE: MSMg01no147_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:21 2005
(641 letters)
>mm_chr11_16170048_16171089
Length = 1042
Score = 1218 bits (630), Expect = 0.0
Identities = 639/642 (99%), Gaps = 1/642 (0%)
Strand = Plus / Minus
Query: 1 agtacccctgtaaggcctctgcaggcactgcattcatgtgttatattagacatacatgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 agtacccctgtaaggcctctgcaggcactgcattcatgtgttatattagacatacatgga 877
Query: 61 gtcaaaatacccatatacacaaaataaaaataaatgaaaaatactaaaaaatatttgtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 gtcaaaatacccatatacacaaaataaaaataaatgaaaaatactaaaaaatatttgtct 817
Query: 121 tga-tttttttataaagaaaccacattgtcttggctttttaaatagctcttctaactttg 179
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 tgattttttttataaagaaaccacattgtcttggctttttaaatagctcttctaactttg 757
Query: 180 tgattgcttttgctaatcttttcctatgccttatttgtagtttaaactgggttatcagca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tgattgcttttgctaatcttttcctatgccttatttgtagtttaaactgggttatcagca 697
Query: 240 tgtgcacaaaagcagagaacagtatccatagggttgatgttatctaaaatttcatgggtc 299
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tgtgcacaaaagcagagaacggtatccatagggttgatgttatctaaaatttcatgggtc 637
Query: 300 ctgaaatgcatgccctgtagattaggatgaacaagtgtactctcatcactttgtgctggt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ctgaaatgcatgccctgtagattaggatgaacaagtgtactctcatcactttgtgctggt 577
Query: 360 aataacatgcaagcctgggcaacgagggcagtgcttgcagtgtgactggttaccatttac 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 576 aataacatgcaagcctgggcaacgagggcagtgcttgcagtgtgactggttaccatttcc 517
Query: 420 tggtaagatgttattgagtgccaagcctttaatatataattctcagaagtctgaggattt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tggtaagatgttattgagtgccaagcctttaatatataattctcagaagtctgaggattt 457
Query: 480 ttgctttagtttgctgtcagagaatggagaagtaaaaccacggagctaaacatttttgat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ttgctttagtttgctgtcagagaatggagaagtaaaaccacggagctaaacatttttgat 397
Query: 540 catggctccattttctttactgtagtacgctattcctctgctggcatcagaggcagggca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 catggctccattttctttactgtagtacgctattcctctgctggcatcagaggcagggca 337
Query: 600 tggagtccagccccctgggcttctcagccaagacatgaacta 641
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tggagtccagccccctgggcttctcagccaagacatgaacta 295
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1042
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1032
Effective search space: 651192
Effective search space used: 651192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
