BAC Information

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BAC

Clone NameMSMg01-148O11
Chromosome11 (Build37)
Map Location 119,466,796 - 119,467,100
singlet/doubletsinglet
Overlap gene4932417H02Rik
Upstream geneD11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1
Downstream geneChmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148O11.T7 (MSMg01no148_o11.b1)MSMg01-148O11.TJ (MSMg01no148_o11.g1)
ACCAG351771AG351772
length722725
length of high quality
(start - end)
271 (45 - 315)652 (74 - 725)
definitionCHROMAT_FILE: MSMg01no148_o11.b1 PHD_FILE: MSMg01no148_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:57 2005CHROMAT_FILE: MSMg01no148_o11.g1 PHD_FILE: MSMg01no148_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTAAAATAGCGAGGGGGAATGCTAGTTTTCTTTTTTTTTTTTTTT
TAAAGATAAGTACATTATTTAATTTAGAATACTGTTCATTTTTTTCTTTT
TTTCTTTTTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATT
TCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTG
CCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATA
TAAAGTTTGCAAGTCCAATGGTTCTCTCTTTCCAGTGATGGCCGACTAGG
CCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGT
TAGCTCATAATGTCCCCCCACCTATAGGGTTGCAGATCCCTTTAGCTCCT
TGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTA
GCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCACAGTCTC
ACAAGACACAGTTACATCTGGGTCCTTTCAATAAAATCTTGCTAGTGTAT
GCAACGAGAATGCTAGTTTTCTATGATTCAAAAAAAAAAAACACACATTG
CAGTTTTTAGTGCTCTTGCCTTTCCCATGCCTCTGCACAGGCATGCGGTG
GTAGTTTTCAAAGGCAGGGGTC
AATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGACTGGCCTCGAAC
TCACAGAGATACACCTGCCTCTGCCTCCCAAGGACTGGAACTAAAGGTGT
GTGTCACCATCTATCTCCTGGCAAAAGAAAAAAAAAAAAAACACTTTAAT
AATAAGGCTGGAGATGTAGCTCAGTTTGTAGAGTGTTGCTTAGCGTGCAC
AAACTCTGAGCTTGATCACTAGGACCATTTAAAAGTGAATTCAGGGGGCT
GGAGAGATGGCTTAGCGGCTAAAAGCACTGACTGCTCTTCCAGAAGTCCT
GAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTATAATGGG
ATCTGATGCCCTCGCCCCCCCCCTCTGAAGAAGCTACAGTGTACTTGTCA
TATGTATAAAAAAATAAAATCTTAAAAAAAAAAAAGAGTAAATTCCATGG
TGCACACCTATAATCCTAGCACCTGGGAAGTGGATGCATGAGTTCAGGGT
CATTCTGACTACACGCCAAGCTGGCCTGCACTACATAAAACCCTGACTCT
AGAAAAGTATTAAACTAAAAGTTCAAAAGATATCCATTAATGTGATTTGA
ACAGTTTGAGTACAGGTTTAGGTAGCAAAAGAAACCACATTCAAAAGAAC
AGGAGAGAAAAAACGTTTAAAATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_o11.g1 MSMg01no148_o11.g1 CHROMAT_FILE:
MSMg01no148_o11.g1 PHD_FILE: MSMg01no148_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:57 2005
         (652 letters)



>mm_chr11_119466063_119467115
          Length = 1053

 Score =  561 bits (290), Expect = e-164
 Identities = 301/306 (98%), Gaps = 5/306 (1%)
 Strand = Plus / Minus

                                                                        
Query: 350  ctctgaagaagctacagtgtacttgtcatatgtat---aaaaaaataaaatcttaaaaaa 406
            |||||||||||||||||||||||||||||||||||   |||||||||||||||| |||||
Sbjct: 1038 ctctgaagaagctacagtgtacttgtcatatgtataaaaaaaaaataaaatctt-aaaaa 980

                                                                        
Query: 407  aaaaaagagtaaattccatggtgcacacctataatcctagcacctgggaagtggatgcat 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979  aaaaaagagtaaattccatggtgcacacctataatcctagcacctgggaagtggatgcat 920

                                                                        
Query: 467  gagttcagggtcattctgactacacgccaagctggcctgcactacataaaaccctgactc 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919  gagttcagggtcattctgactacacgccaagctggcctgcactacataaaaccctgactc 860

                                                                        
Query: 527  tagaaaagtattaaactaaaagttcaaaagatatccattaatgtgatttgaacagtttga 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859  tagaaaagtattaaactaaaagttcaaaagatatccattaatgtgatttgaacagtttga 800

                                                                        
Query: 587  gtacaggtttaggtagcaaaagaaaccacattcaaaagaacaggagag-aaaaaacgttt 645
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 799  gtacaggtttaggtagcaaaagaaaccacattcaaaagaacaggagagaaaaaaacgttt 740

                  
Query: 646  aaaata 651
            ||||||
Sbjct: 739  aaaata 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1053
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1043
Effective search space:   669606
Effective search space used:   669606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)