Query= MSMg01no149_f03.b1 MSMg01no149_f03.b1 CHROMAT_FILE:
MSMg01no149_f03.b1 PHD_FILE: MSMg01no149_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:33 2005
(497 letters)
>mm_chr11_15299614_15300510
Length = 897
Score = 857 bits (443), Expect = 0.0
Identities = 485/505 (96%), Gaps = 11/505 (2%)
Strand = Plus / Minus
Query: 1 gaaacagatatttgacgatatctataaagcaccatggcattctgccaatagttcacttct 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 834 gaaacagatatttgaagatatctataaagcaccatggcattctgccaatagttcactcct 775
Query: 61 atgcacatgtctatctggccagatttgaattaagcaaaggtgtatttatattacaaaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 774 atgcacatgtctatctggccagatttgaattaagcaaaggtgtatttatattataaaaac 715
Query: 121 ccag--------atcaatcttctatttccctttgtataaaaatcacaaaaagattataaa 172
|||| ||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 714 ccaggcttaattatcaa---tctatttccctttgtataaaaatcacaaaaagattacaaa 658
Query: 173 taaattatttatgatatgctcaaaataaattattttaatacatttactaaaaaggcgaaa 232
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 657 taaattatttatgatatgctcaaaataaattattttaatacatttactaaaaaggcaaaa 598
Query: 233 gtagttgtactaccttaatccacacaaattataacaagaatagctttttgaatattcagt 292
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gtagttgtattaccttaatccacacaaattataacaagaatagctttttgaatattcagt 538
Query: 293 catagtattgaaaaggtacatgtgaatattttgtttctatatgactgtatggagtgatga 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 catagtattgaaaaggtacatgtgaatattttgtttctatatgactgtatggagtgatga 478
Query: 353 attgaaatacatgtaaaagataattttaacagaaatggattttgaatggcaaagattgcg 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 477 attgaaatacatgtaaaagataattttaacagaaatggattttgaatggcaaagattgtg 418
Query: 413 ttcctacattcgctgttattaaagaaagtatcacaaattatatgcaacttcacctaagaa 472
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 417 ttcctacattcgctgttattaaagaaagtatcacaaattatatgcaacttcacccaagaa 358
Query: 473 tctttgaatgcagttgagtgatctt 497
|||||||| ||||||||||||||||
Sbjct: 357 tctttgaaggcagttgagtgatctt 333
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_f03.g1 MSMg01no149_f03.g1 CHROMAT_FILE:
MSMg01no149_f03.g1 PHD_FILE: MSMg01no149_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:33 2005
(480 letters)
>mm_chr11_15118506_15119385
Length = 880
Score = 801 bits (414), Expect = 0.0
Identities = 423/426 (99%)
Strand = Plus / Plus
Query: 55 aaagaaattgcctgagtcactggaaaagacagatggcttcaagaaaggggagagactgga 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aaagaaattgcctgagtcactggaaaagacagatggcttcaagaaaggggagagactgga 314
Query: 115 gatgtaatctccaaacagaaacctgaaccagagcggaggaagatatatgtatagccgaga 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gatgtaatctccaaacagaaacctgaaccagagcggaggaagatatatgtatagccgaga 374
Query: 175 ctggaaagggggaactgagagtcctgtcttcctacaagagaagcaacagcaaagtctgga 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ctggaaagggggaactgagagtcctgtcttcctacaagagaagcaacagcaaagtctgga 434
Query: 235 aaaggctaatgctgctttggcattccctcttcagaaaggcagccaagctcatctaaacat 294
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaaggctaatgctgctttggcgttccctcttcagaaaggcagccaagctcatctaaacat 494
Query: 295 tggaaacaaagaaacactaatcctacttatttagctgtgcttgtggtagagtttagctct 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tggaaacaaagaaacactaatcctacttatttagctgtgcttgtggtagagtttagctct 554
Query: 355 gaggtaagtttcccacttagatgcttacataggagcctttatgttcctttctagagttct 414
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 555 gaggtaagtttcccacttagatgcttacaaaggagcctttatgttccttcctagagttct 614
Query: 415 ctttttaagatttattcacactttttagtatatcacttgtacatatatcagttacttcta 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ctttttaagatttattcacactttttagtatatcacttgtacatatatcagttacttcta 674
Query: 475 aataca 480
||||||
Sbjct: 675 aataca 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
