Query= MSMg01no149_k15.b1 MSMg01no149_k15.b1 CHROMAT_FILE:
MSMg01no149_k15.b1 PHD_FILE: MSMg01no149_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:00 2005
(565 letters)
>mm_chr11_44053295_44054259
Length = 965
Score = 1044 bits (540), Expect = 0.0
Identities = 558/564 (98%)
Strand = Plus / Plus
Query: 1 gcaaccacttctttcctgcttgcttgagttggggtcctctgcctggaatttgctcccctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcaaccacttctttcctgcttgcttgagttggggtcctctgcctggaatttgctcccctt 260
Query: 61 ctctgttacctcttgtaatggtcgacattggccaggtttagaatagccatggagaaactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 ctctgttacctcttgtaatggtcgacattggccaggtttagaatagccatggagagactg 320
Query: 121 ggaatgtagctcagttggctgagtgtttgcttaggaagaacaaagccttgggctccattc 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ggaatgtagctcagttggctgagtgtttgcttagtaagaacaaagccttgggctccattc 380
Query: 181 ccagcaacgcatacactggcttggcatacatatgcacatggttgcacatacctggtgtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagcaacgcatacactggcttggcatacatatgcacatggttgcacatacctggtgtct 440
Query: 241 caccatcctgtgaggcttgcctttgtcaagaaaagcaatatgctcacccttcaatttccc 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccccatcctgtgaggcttgcctttgtcaagaaaagcaatatgctcacccttcaatttccc 500
Query: 301 tctgctcacctttccctggtggcataaatttaggggcaaccagtgtttcctgcagtgaaa 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 tctgctcacctttccctggtggcataaatttaggggcaaccagtgtttcctgcagtgaga 560
Query: 361 gaaaggtttccagaaccctcaccacacaaaagtgcaacaaaataattaagattgccctgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaaggtttccagaaccctcaccacacaaaagtgcaacaaaataattaagattgccctgt 620
Query: 421 tcttaaaacattcaaccaataaaaattcgagcttccagtttttgccctagctctctgctc 480
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 621 tcttaaaacattcaaccaatacaaattccagcttccagtttttgccctagctctctgctc 680
Query: 481 ttctaattcctcttctttgagtagcctcactgaaattccttactctctttatgtcaaaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttctaattcctcttctttgagtagcctcactgaaattccttactctctttatgtcaaaag 740
Query: 541 cactggtgatatctcactctgtct 564
||||||||||||||||||||||||
Sbjct: 741 cactggtgatatctcactctgtct 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_k15.g1 MSMg01no149_k15.g1 CHROMAT_FILE:
MSMg01no149_k15.g1 PHD_FILE: MSMg01no149_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:01 2005
(534 letters)
>mm_chr11_44154858_44155791
Length = 934
Score = 830 bits (429), Expect = 0.0
Identities = 499/535 (93%), Gaps = 22/535 (4%)
Strand = Plus / Minus
Query: 1 cattttggatattacagtgaatgtgagctgacaaggagacagacagaggatgagagtccc 60
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 925 cattttggatattacagtgaatgtgagcagacaaggagacagacagagggtgagagtccc 866
Query: 61 ctactgcactggacacacctgattgactgtccctccttctcagtcatcctcagagatgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ctactgcactggacacacctgattgactgtccctccttctcagtcatcctcagagatgcc 806
Query: 121 tatggagcctggtccactgagaactagccacaggtgaagaaaatcctggtttctcccatt 180
|||||||||||||||||||||||| | || |||| |||||||||||||||||||||||||
Sbjct: 805 tatggagcctggtccactgagaaccaaccgcaggcgaagaaaatcctggtttctcccatt 746
Query: 181 tcaggtcttccagcggtcgaaacccatcccaagtgggtgttggcttgcatgcatttctac 240
||||||||||| |||||||||||||||||||||||||||||
Sbjct: 745 tcaggtcttcc--------------------agtgggtgttggcttgcatgcatttctac 706
Query: 241 ttggaagtacatgaagtaggctggcagtttgctcacgtctgtgtttatgaggcaccaaca 300
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ttggaagcacatgcagtaggctggcagtttgctcacgtctgtgtttatgaggcaccaaca 646
Query: 301 tagactctgacgtccatggtgccaccagagaagatctgagatggcttggaggtactagag 360
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 645 tagactctgacgtccatggtgttaccagagaagatctgagatggcttggaggtactagag 586
Query: 361 tatcttcacactctattgtctagtcctcacagtagcttgtgtgagctggccccatttgtt 420
| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 585 tgtcttcacactctgttgtctagtcctcacagtagcttgtgtgagctgcccccatttgtt 526
Query: 421 gctgttctagtctttggaagatagaatgtttctctctttggaaacagtgtcttcc-attt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 525 gctgttctagtctttggaagatagaatgtttctctctttggaaacagtgtcttcctattt 466
Query: 480 tataatgaagacataaagcgggaggagcaagtgaaggaaggacgctgccctcatt 534
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 465 -ataatgaagacataaagcaggaggagcaagtgaaggaaggacgctgccctcatt 412
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
