BAC Information

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BAC

Clone NameMSMg01-149P02
Chromosome11 (Build37)
Map Location 118,509,927 - 118,510,347
singlet/doubletsinglet
Overlap geneD11Bwg0517e
Upstream geneTnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik
Downstream geneEnpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149P02.T7 (MSMg01no149_p02.b1)MSMg01-149P02.TJ (MSMg01no149_p02.g1)
ACCAG352520AG352521
length501712
length of high quality
(start - end)
49 (82 - 130)421 (77 - 497)
definitionCHROMAT_FILE: MSMg01no149_p02.b1 PHD_FILE: MSMg01no149_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:22 2005CHROMAT_FILE: MSMg01no149_p02.g1 PHD_FILE: MSMg01no149_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTAATCXXXXXXXXXXXXXXXXXXXXXXAACTCACTTTACTACCCCAAAA
AAGAAAGGATCCGCGGAATCACCATCCCCAGATAGAAACAACAGAGCACA
GTGCAATGCAGACACCATTCTTAACTCCCATGGGNAAAAAGTTAACTGTT
GTTTGGTTAAAGGTTAACTCTTTGGCTTGGGAAAGGAAGACACCCATAAC
CCAAACCCCAACTTTGGGGGGGAAAAAAGAAAGGTTTAATTGGCTCCCCT
TCCGAACTTGGTTACAATGGAAGGATTCGGAAAGGAATTCCGGCAGGGCA
GGAAACCGGAGCCGGACTTAAATGAAACCCTGGGGGCAAAAAATTTTTGT
TTGGCCCCCAAAAATTGTCCCCCCGGGCCCCTCTTTTGGGCCCCCGGAAC
CCCCTCCCAAGGGGGGGCCCCCCCCCCAGGGGGGTAAAAAACCCCCCTCT
TTTGCCTTATTTTAAAAAAAGGTCCCCCCCAAATTTTTTCTACAAACCCA
A
NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACCTGGAGCTCTGCCACCTGCAG
CCCTCAGGGCTTGGTGTCACTGGCCGGGTGTGTGGACTCCAGCAGACCTT
AGGATAGAGCTGCTGACTCAGCCCTGCAGGCTGTGGCCGCTTGCCATGGT
CAGCTCAGCGTCTGCTCAGCTGGAGTGTCTGGGGCAGGTGATGACAGAAC
AGGACCCGGTGGCCACTGGACCTTAGTGACAGAGGAGGAAATGGAAGCCA
GGAAAGAGAGGCCCACAGTCACATGTCCTACAGGTGCAGGGTCAGCATCT
GTTCCCTTGCTGGGTCCCAGGAAGGGGAAGCAGTGTTGACAGCCATCCCT
GGCCGAGGCTCAGACAGTGAGGGGTAGAACTGTGTCTACAACCCGGCTTG
CTGAACTTAGCATCGCGACAAGAAAAAGGTTTAATGTAGGGGACATGGGA
CTGGGCGGAGCCAGCAGGAGGAACAGATGGACAGGTCAGGAAGGTGCCTC
TCCTTCTATAGGTTGGGCACACAAGGAGAAGAGTTTAGCACCTAGTGGGT
ACTCAACATGGGAGGACATAAGTCCAAGCACCTAGTGGGCACTCAGCATG
CGAGAACGTGAGTCTTACCACCTAGTGCGCCTCGTATGTGATGACATGAG
TCTCCACCACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_p02.g1 MSMg01no149_p02.g1 CHROMAT_FILE:
MSMg01no149_p02.g1 PHD_FILE: MSMg01no149_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:22 2005
         (421 letters)



>mm_chr11_118509727_118510547
          Length = 821

 Score =  745 bits (385), Expect = 0.0
 Identities = 412/421 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacctggagctctgccacctgcagccctcagggcttggtgtcactggccgggtgtgtgga 60
           |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 201 cacctggagctctgccacctgcagccctcagggcttggtgtcgctggcagggtgtgtgga 260

                                                                       
Query: 61  ctccagcagaccttaggatagagctgctgactcagccctgcaggctgtggccgcttgcca 120
           |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 261 ctccagcagaccttaggatagagctgctgactcagccctgcaggttgtggccacttgcca 320

                                                                       
Query: 121 tggtcagctcagcgtctgctcagctggagtgtctggggcaggtgatgacagaacaggacc 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 tggtcagctcagcgtctgctcagctggagtggctggggcaggtgatgacagaacaggacc 380

                                                                       
Query: 181 cggtggccactggaccttagtgacagaggaggaaatggaagccaggaaagagaggcccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 cggtggccactggaccttagtgacagaggaggaaatggaagccaggacagagaggcccac 440

                                                                       
Query: 241 agtcacatgtcctacaggtgcagggtcagcatctgttcccttgctgggtcccaggaaggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtcacatgtcctacaggtgcagggtcagcatctgttcccttgctgggtcccaggaaggg 500

                                                                       
Query: 301 gaagcagtgttgacagccatccctggccgaggctcagacagtgaggggtagaactgtgtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaagcagtgttgacagccatccctggccgaggctcagacagtgaggggtagaactgtgtc 560

                                                                       
Query: 361 tacaacccggcttgctgaacttagcatcgcgacaagaaaaaggtttaatgtaggggacat 420
           |||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 561 tacaaccccgcttgctgaacttagcatcatgacaagaaaaaggtttaatgtaggggacat 620

            
Query: 421 g 421
           |
Sbjct: 621 g 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)