BAC Information

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BAC

Clone NameMSMg01-150A15
Chromosome11 (Build37)
Map Location 18,522,719 - 18,523,086
singlet/doubletsinglet
Overlap genenone
Upstream geneEtaa1, LOC327871, LOC627696, LOC627716, LOC665796
Downstream geneMeis1, LOC635455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150A15.T7 (MSMg01no150_a15.b1)MSMg01-150A15.TJ (MSMg01no150_a15.g1)
ACCAG352590AG352591
length726736
length of high quality
(start - end)
369 (41 - 409)577 (76 - 652)
definitionCHROMAT_FILE: MSMg01no150_a15.b1 PHD_FILE: MSMg01no150_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:29 2005CHROMAT_FILE: MSMg01no150_a15.g1 PHD_FILE: MSMg01no150_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTT
TGTGATTTCTCCTCTTTTTTTTTTTTAAATTGGAAAATGAGTTTAGTGAG
AATAGTTTGTCTGGGGAAGACCTAATTATAAAGTTCAAGGAAGAAAAAAT
GTGCTTTAAGACAAAAAAGAAACCCTTCTCTCCTTCCTGCCAGCTTAGAG
AGGTTTCTTATCTGTACTTCTCAGATAACATATTCCATTCCCCTAGCCTG
GAAACTTCCTTAAACCAAAGGAAAATGAAATTCTCCTCTCCACGGTCTCC
CTAAGATCTAAGCAATGTTTTTTTTTTTCTAAGCAATCTTTTTTTATCAG
TCTTCATAATAAGCTAACATATACTTAATGAAATATTCTAAATCAGAATT
TTGAAAAACCACAGAGTGTCTGGAATTTAGAAATACTGTTCTACAGTGCT
CCTTGATGTCTAACACCCAAGGGAAAAAAACAAGCACAAAAAAGCCTCAG
TTGGACTCGAGACTCGAGCCCCGGGCTACCTTGCCAGCAGAGTCTTGCCC
AACACCTGCAAGGGCCCACACGGGACTCCCCACGGGACTCTAAGACCTCT
GGTGAGTGGACCACAGTGCCTGCCCCCATCCAATCCCGCGGAACTCGACA
CTGCAGTACATAGCACAGCACACTACCCGGGCCTGATCTGGGGCACAAGT
CCCCTTCGCTCGACCCGAGACTCGAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGATTAGATCTATCCCACATTTT
AAATTGGATTATTTGTTCTTTTGATATCTAGTTTTTTGAGTTCTTTATAT
ATTTTGGATATTAGTTTTCTATCTGATGTGGAGTTGGCAAAAATATTTTT
CCCTTCTGTAGGCTGCTACTTTGTCTGCTAGACAGTATCTCTTGCCTTAC
TAAAGGTTTTTCAGTACTATGAGATCTTATATTTATTAATTGTTGATCTT
AGTGCCTGATCTATTGGTGCTCTGTTCAGAAAGTTGCATTCTATGCCAAT
ATGTTCAAGGCTATTCCCCACTTTCTCTTCTATCAAGTTCAGTGTATCTG
ATCTTATGCGAGATACCCCCAATAGCCACACCAGCTTGTTTCTCAGGTCC
ATTTGCTTGGGATATCTTTTCTAACCTTTTACCCTGGGTCATGTCTATCC
TTGATGTGGAGGTGCAATTCTTGCATGCAGAAGAATTTATTCAGTTTTCG
TTCATACATTCTGTTAACCTTTGTCTTTTTATTGAATTGAGACCTTCGAT
ATTGAGAGCTATCAATGACTAGTGATTGTTAATTCCTGTTATATTGGTGT
ATGTGCGCGTGCGTGCGTGCCTGCGTGCATGCGTGCCTGTGTGTGTGTGA
TCAATATCGAGAGCTCATATTACCCTTATCCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_a15.b1 MSMg01no150_a15.b1 CHROMAT_FILE:
MSMg01no150_a15.b1 PHD_FILE: MSMg01no150_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:29 2005
         (369 letters)



>mm_chr11_18522518_18523287
          Length = 770

 Score =  696 bits (360), Expect = 0.0
 Identities = 366/368 (99%), Gaps = 1/368 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   gaattcctttgtgatttctcctcttttttttttttaaattggaaaatgagtttagtgaga 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcctttgtgatttctcctcttttttttttttaaattggaaaatgagtttagtgaga 261

                                                                       
Query: 62  atagtttgtctggggaagacctaattataaagttcaaggaagaaaaaatgtgctttaaga 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atagtttgtctggggaagacctaattataaagttcaaggaagaaaaaatgtgctttaaga 321

                                                                       
Query: 122 caaaaaagaaacccttctctccttcctgccagcttagagaggtttcttatctgtacttct 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 caaaaaagaaacccttctctccttcctgccagcttagagaggtttcttatctgtacttct 381

                                                                       
Query: 182 cagataacatattccattcccctagcctggaaacttccttaaaccaaaggaaaatgaaat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cagataacatattccattcccctagcctggaaacttccttaaaccaaaggaaaatgaaat 441

                                                                       
Query: 242 tctcctctccacggtctccctaagatctaagcaatgttttttttttt-ctaagcaatctt 300
           ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 442 tctcctctccacggtctccctaagatctaagcaatcttttttttttttctaagcaatctt 501

                                                                       
Query: 301 tttttatcagtcttcataataagctaacatatacttaatgaaatattctaaatcagaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tttttatcagtcttcataataagctaacatatacttaatgaaatattctaaatcagaatt 561

                   
Query: 361 ttgaaaaa 368
           ||||||||
Sbjct: 562 ttgaaaaa 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 770
Length adjustment: 9
Effective length of query: 360
Effective length of database: 761
Effective search space:   273960
Effective search space used:   273960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)