BAC Information

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BAC

Clone NameMSMg01-150I10
Chromosome11 (Build37)
Map Location 71,590,687 - 71,590,823
singlet/doubletsinglet
Overlap geneWscd1
Upstream geneA430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik
Downstream geneAipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150I10.T7 (MSMg01no150_i10.b1)MSMg01-150I10.TJ (MSMg01no150_i10.g1)
ACCAG352940AG352941
length718751
length of high quality
(start - end)
137 (87 - 223)245 (79 - 323)
definitionCHROMAT_FILE: MSMg01no150_i10.b1 PHD_FILE: MSMg01no150_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:06 2005CHROMAT_FILE: MSMg01no150_i10.g1 PHD_FILE: MSMg01no150_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCACTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCACACCAACCG
CGGAATTCTAAAATGTTAACCAACGAAGTCTGACACCGTCTGCAGCAGGT
TATTAAGCTGTGGCTGTCCCCAAGTCGTAATGCCTGGGAAACTGGAAAGG
CAGACATGACCCTGCACCTGTTTCCACCCAGTTTACCTGCTCTGACTAAA
TTCCCCTGCGTCTCAGTAGCTGGGAAGGGTCTGCCCCAGGGAGACCCCCA
GTAACTGTGCAGCACTCTGGTCTTTGTCACTAGTAGCATCCGTGGGAGTC
TGAGATCTGTGAGCCTTGATATTATATGAGTTTCTTTTGCTGGGTTGCAT
ACGTACTTGCCAGGAGCACCTTGCCAATGGTGCTTTACCCTAGACAGGGT
GAGACACATCTGCACTCCCCCCACCCAAGACGCACAGGGGCCAGTTGATT
GTGAGTTTAATACTCGCCTGGATGATACCGTAACCTCAAAGGAGCAAGGT
CCCAGGATGTGACTCACTTACACATCCCTTGCCTAGTGTGTATAACACCC
CGGTTCCATCCTACCACTGCACAAACCACATTCATCCCCTACTCTAGCCA
AACCCTGTGATGTTGAACCACGTATGTGACCTCTAAACCCTCCTTTGTTT
AACCGTATTCCCACCCGTAATCCCCCATCTTGTTACCAACACCCTGAAGG
CGCGAAACATCCCCCTAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACACAGGGAGGAGCTTGAGCATAGG
AGACCTCACAGCCCACCTCCACAGTGACACACTTCCTCCAACAAGGCCAC
ATGTACTCTAATAAGACTACACGTCCTAATAGCGCCACTCCCTGTGGGCA
AACATGAGTTTATGGTGGCCAAACCTATTCAAACCACCACACCTGTTTCA
CAGCTACTCTTGTCATAGCATCTCAGCTCCAGATCTTCTGGGTCTTCTCT
TTTACAGGGGCCTCAAGACTACACTGTGTACTTCTGGAGAATCCGGAAGA
ATCAGTGGTCCCTGACTCAAGTCCCTCAATGCCTTCCAGGCGAGGAGACC
CAGCCACAGTGCTGGGACCCCCCCCTGGCCGTCCTGACAAGCTGCCCTCT
GCCTCACCCTACATTCTTAGGAACTCTCTTCTGGCTTTCCTTCCCCCCGT
TCTCTGACACCCCCACGCTGTCACGCCCCACCCACACTTTTCCCCCCTAG
ACTCCCCCCCTTTTGCCTTATCCACCCCCCCTTCCCCTATAATAGTGTTT
CCTTATCCCCCCCCCTCCCTGCTCCCCTAGTCTCTCCCTTTTTCCCACCA
CCCCCCACCTGTTTGTCTCTCCCCCGACCCTCCGTGCTTCCCCGCCACTT
CTATCCCACCCACCCCCCCGCCGCCCTCGTTCTTCTCTTCCCCCTCCCCT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_i10.b1 MSMg01no150_i10.b1 CHROMAT_FILE:
MSMg01no150_i10.b1 PHD_FILE: MSMg01no150_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:06 2005
         (137 letters)



>mm_chr11_71590487_71591023
          Length = 537

 Score =  265 bits (137), Expect = 8e-76
 Identities = 137/137 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtctgcagcaggttattaagctgtggctgtccccaagtcgtaatgcctgggaaactgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgtctgcagcaggttattaagctgtggctgtccccaagtcgtaatgcctgggaaactgga 260

                                                                       
Query: 61  aaggcagacatgaccctgcacctgtttccacccagtttacctgctctgactaaattcccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggcagacatgaccctgcacctgtttccacccagtttacctgctctgactaaattcccc 320

                            
Query: 121 tgcgtctcagtagctgg 137
           |||||||||||||||||
Sbjct: 321 tgcgtctcagtagctgg 337


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 137
Length of database: 537
Length adjustment: 8
Effective length of query: 129
Effective length of database: 529
Effective search space:    68241
Effective search space used:    68241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)