Query= MSMg01no151_f17.b1 MSMg01no151_f17.b1 CHROMAT_FILE:
MSMg01no151_f17.b1 PHD_FILE: MSMg01no151_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:08 2005
(684 letters)
>mm_chr11_21975955_21977037
Length = 1083
Score = 1216 bits (629), Expect = 0.0
Identities = 665/680 (97%), Gaps = 6/680 (0%)
Strand = Plus / Plus
Query: 5 gaattccatgcttgcccagtggcagggattacagaagctcacctattcaccttctacaga 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgcttgtccagtggcagggattacagaagctcacctattcaccttctacaga 264
Query: 65 aaacagaatgaaaaattacaagggctttagaggtttgggtagactactatatttcactgc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaacagaatgaaaaattacaagggctttagaggtttgggtagactactatatttcactgc 324
Query: 125 caacttggtcaggtcttgactgaataaataggatttaggatgaaacattaaaactgttta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caacttggtcaggtcttgactgaataaataggatttaggatgaaacattaaaactgttta 384
Query: 185 gcagatcttttcagtccatttcaaacttttcttatgctggtttataatataagcagacat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcagatcttttcagtccatttcaaacttttcttatgctggtttataatataagcagacat 444
Query: 245 gctttaaatgaccacacctgctcatttctctggggatggcctgatctctgcttctctaac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctttaaatgaccacacctgctcatttctctggggatggcctgatctctgcttctctaac 504
Query: 305 aaagaaagcaagagaaaaaaaaaattggccttttttgttgcaaaacagagtggaaagtca 364
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaagaaagcaagagaaaaaaaaa-ttggccttttttgttgcaaaacagagtggaaagtca 563
Query: 365 aaatcttccccacgcttgctccatctggacagattaaatctttgatcagcctcggggatt 424
||||||| | || | ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 564 aaatctttctcaagtttgctccatctggtcagattaaatctttgatcagcctcggggatt 623
Query: 425 acatttatttttgtagtaacccttaagttttgggcttgtttaataaacatgggcaaaata 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 acatttatttttgtagtaacccttaagttttgggcttgtttaataaacatgggcaaaata 683
Query: 485 gtaaaagaacataaatttagatctgggatctactttttaaatagaaataggcaatacaaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 684 gtaaaagaacataaatttagatctgggatctactttttaaatagaaataggaaatacaaa 743
Query: 545 aggtacaagtcaggaaaaagaaaaaacccaaaaacaaaacaaaacaaaacaaaacaaacc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 744 aggtacaagtcaggaaaaagaaaaaacccaaaaacaaaacaaaacaaaacaaa-----cc 798
Query: 605 agacatgcattgcaagaatgtggattccattagcagtcaactcatganattgaaaatatc 664
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 799 agacatgcattgcaagaatgtagattccattagcagtcaactcatgaaattgaaaatatc 858
Query: 665 atactctacagctttttcat 684
||||||||||||||||||||
Sbjct: 859 atactctacagctttttcat 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1083
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1073
Effective search space: 723202
Effective search space used: 723202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no151_f17.g1 MSMg01no151_f17.g1 CHROMAT_FILE:
MSMg01no151_f17.g1 PHD_FILE: MSMg01no151_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:08 2005
(624 letters)
>mm_chr11_22039911_22040936
Length = 1026
Score = 1145 bits (592), Expect = 0.0
Identities = 617/626 (98%), Gaps = 2/626 (0%)
Strand = Plus / Minus
Query: 1 ataaaaagccttttaaaaacaaaacaaaacaaaaaccaatgttaactgaagttccaaacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 ataaaaagccttttaaaaacaaaacaaaacaaaaaccaatgttaactgaagttccaaacg 767
Query: 61 ttacactttcactagtgtacaactcccagaggaacttaggtggtatttaattaattcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 ttacactttcactagtgtacaactcccagaggaacttaggtggtatttaattaattcttg 707
Query: 121 ttgtttctcatcttttcttcccaaaagtttgagggtataataccagtggcacagaacttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ttgtttctcatcttttcttcccaaaagtttgagggtataataccagtggcacagaacttc 647
Query: 181 cattttttatatctttacctcagtaataaacttatgaccttttaccaagtaaacgcttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 cattttttatatctttacctcagtaataaacttatgaccttttaccaagtaaacgcttct 587
Query: 241 gtgactcgtcttccttcatgaagttcttcctgtatcctgtggcctaaacttgtattcgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gtgactcgtcttccttcatgaagttcttcctgtatcctgtggcctaaacttgtattcgta 527
Query: 301 ccaacagtgcctagtctttgatgtgtaaagcagtcttcagtgccccggcatatctgtcag 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 526 ccaacagtgcctagtctttgatgtgtaaagcagtcttcagtgccctggcatatctgtcag 467
Query: 361 caactggggaaggtgtgtgccttcactgagcattagcttgtgtgtccttacacaaagggc 420
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 466 cagctggggaaggtgtgtgccttcactgagcgttagcttgtgtgtccttacacaaagggc 407
Query: 421 ctgcccagggtttgcaagtgtctgtgtgcccggtcgctactccagttatgtggcatgatg 480
|||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 406 ctgcccagggtttgcaggtgtctgtgtgctcagtcgctactccagttatgtggcatgatg 347
Query: 481 gaagctaataaggcttagagcatttctgaagtaccttttgaagatccatatgcagcgttt 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 346 gaagctaataaggcttagagcatttctgaagtaccttttgaagatccatatgcagccttt 287
Query: 541 ctggtatggtgt--gtttttgtttttcagggatgcccctccttcagtttattcagccaca 598
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ctggtatggtgtctgtttttgtttttcagggatgcccctccttcagtttattcagccaca 227
Query: 599 catccatttttaattaatttaaatgg 624
||||||||||||||||||||||||||
Sbjct: 226 catccatttttaattaatttaaatgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1026
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1016
Effective search space: 623824
Effective search space used: 623824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
