BAC Information

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BAC

Clone NameMSMg01-152B14
Chromosome11 (Build37)
Map Location 104,015,794 - 104,205,277
singlet/doubletdoublet
Overlap geneCrhr1, 4933407P14Rik, Mapt, 1700081L11Rik
Upstream geneFmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645
Downstream geneCdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152B14.T7 (MSMg01no152_b14.b1)MSMg01-152B14.TJ (MSMg01no152_b14.g1)
ACCAG354079AG354080
length762740
length of high quality
(start - end)
371 (75 - 445)663 (78 - 740)
definitionCHROMAT_FILE: MSMg01no152_b14.b1 PHD_FILE: MSMg01no152_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:06 2005CHROMAT_FILE: MSMg01no152_b14.g1 PHD_FILE: MSMg01no152_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,015,794 - 104,016,161)(104,204,615 - 104,205,277)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
GAATTCATTTCTATTGCCGGACCTGGTGGGAGCAGCATCCAAATGCGGAC
CCCTGACCCCTCAGAGAGGTGAGGCAGGGAAGGGAGAGCTGGACCTGCAG
GAACCAACTGTGTCCTGTACTGACTCCTAGTCGGGCTCACTTGCACCCCA
AACTATGGGGCTCAGGACTGGTACCCACAGGAAGACCATACCCTAGGCTT
CTTCGGTCCTTCCTTTGCCCAAATGGAGGGAGGGGGAAATCCATGAGGTT
AAATGCACTGAATTTTGAAGATCTGTTTCACAAACTGCAGAGTGCACATA
ACTACTGGGACTAACCATGGGTGGCTTTTTAAAAGCACTTAACTATAGAG
CCAGGAAGAAGAGAAAAACGCACGCTACCAATCGCTTGGCTATGAGGTAG
GCATCGGTAGGCCAGGACAGGCTCCCGGCTAATCTAATAAGCCTTTCTGA
ATGAGAGGGCCTTTCCTCCCCTATTTCGCCCTACTTTCTCACCCCTTCTT
TCCCTTCTCCCCCTTTTTTTCTCTCACGGGCCCTCCTTTCCTGTTTTATA
TTTCTCCCGACCCCCTTCTTCCTCTTACTAGCCTTTGTCGCTAAATCACT
CGTCATCACCTCTTTTCTACCTCCTTTCTTTTTTTCCCCCTTTCCCCATT
CATTCTAACTTCTTTCCTTACCCGACTTTTTTCTAACCTCATCTCTGTTC
TACCTTCACCTT
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCATCAATGTATAAAAAGGTG
TTATATTTTTACCCCTATTGGAACTTGCAAATAAAAGGCCGAGATGGTAA
CTACTTATGATAGAATGACCAACAATAAAGATGACATAAGTGGCTCTTCC
ATATGGCAGCCCCTGCTTTGGCAAGTGAGACTACTTGTTAAACCAGAAAG
GTGTGTGAAATCGGTATATTGACCTCTGGAGAGTCAGTAACTGAACACAC
TTTAAGGACAAAGGAGCTGGAGGGTCAGGTTCTTGGACTAACCTGCAGTG
TTTTATGTTTCTTACAGATGTTCCCACAAGCCTGCACTTCCAGAGCATGC
TGAAGTCTCAGTGGCAAAACAAGCCTTTTGACAAGATCAAACCTACCAAA
AAGTTTTCTCTTAAGCACAGAGCGACCATGCCATGCAGTCTGTCAGATCC
AGTTCGTAAAGACAGACACAAGTTGGTCAACTCCTTCCTTACAACAGCCA
GTAAGTTTCCAGGCACTGAGGAATCCTCTGGAATCACTATTGCTACGATT
TTTACCTCTTGTATTTTTTGGTTTTCTACACCAGTATTCTGGAATTGAGG
AAAGCATTGAGTTATTTAATTAAGCTCACAGCTTACTCCATCTGATTGTT
TGGGGTGCTTTCTGATAGACTTTGGAAGCTCAAACAGGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_b14.b1 MSMg01no152_b14.b1 CHROMAT_FILE:
MSMg01no152_b14.b1 PHD_FILE: MSMg01no152_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:06 2005
         (371 letters)



>mm_chr11_104015594_104016364
          Length = 771

 Score =  673 bits (348), Expect = 0.0
 Identities = 363/368 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtgggagcagcatccaaatgcggacccctgacccctcagagaggtgaggcagggaaggg 60
           |||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||
Sbjct: 201 ggtgggagcagcatccaaatgctgacccctgacccctcagagaggtgggggagggaaggg 260

                                                                       
Query: 61  agagctggacctgcaggaaccaactgtgtcctgtactgactcctagtcgggctcacttgc 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggctggacctgcaggaaccaactgtgtcctgtactgactcctagtcgggctcacttgc 320

                                                                       
Query: 121 accccaaactatggggctcaggactggtacccacaggaagaccataccctaggcttcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accccaaactatggggctcaggactggtacccacaggaagaccataccctaggcttcttc 380

                                                                       
Query: 181 ggtccttcctttgcccaaatggagggagggggaaatccatgaggttaaatgcactgaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtccttcctttgcccaaatggagggagggggaaatccatgaggttaaatgcactgaatt 440

                                                                       
Query: 241 ttgaagatctgtttcacaaactgcagagtgcacataactactgggactaaccatgggtgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgaagatctgtttcacaaactgcagagtgcacataactactgggactaaccatgggtgg 500

                                                                       
Query: 301 ctttttaaaagcacttaactatagagccaggaagaagagaaaaacgcacgctaccaatcg 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 ctttttaaaagcacttaactatagagccaggaagaagagaaaaatgcacgctaccaatcg 560

                   
Query: 361 cttggcta 368
           ||||||||
Sbjct: 561 cttggcta 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no152_b14.g1 MSMg01no152_b14.g1 CHROMAT_FILE:
MSMg01no152_b14.g1 PHD_FILE: MSMg01no152_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:06 2005
         (663 letters)



>mm_chr11_104204415_104205477
          Length = 1063

 Score = 1259 bits (651), Expect = 0.0
 Identities = 660/663 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccatcaatgtataaaaaggtgttatatttttacccctattggaacttgcaaataaaag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 863 tcccatcaatgtataaaaaggtgttatatttttacccctattggaacttgtaaataaaag 804

                                                                       
Query: 61  gccgagatggtaactacttatgatagaatgaccaacaataaagatgacataagtggctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gccgagatggtaactacttatgatagaatgaccaacaataaagatgacataagtggctct 744

                                                                       
Query: 121 tccatatggcagcccctgctttggcaagtgagactacttgttaaaccagaaaggtgtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tccatatggcagcccctgctttggcaagtgagactacttgttaaaccagaaaggtgtgtg 684

                                                                       
Query: 181 aaatcggtatattgacctctggagagtcagtaactgaacacactttaaggacaaaggagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aaatcggtatattgacctctggagagtcagtaactgaacacactttaaggacaaaggagc 624

                                                                       
Query: 241 tggagggtcaggttcttggactaacctgcagtgttttatgtttcttacagatgttcccac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tggagggtcaggttcttggactaacctgcagtgttttatgtttcttacagatgttcccac 564

                                                                       
Query: 301 aagcctgcacttccagagcatgctgaagtctcagtggcaaaacaagccttttgacaagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aagcctgcacttccagagcatgctgaagtctcagtggcaaaacaagccttttgacaagat 504

                                                                       
Query: 361 caaacctaccaaaaagttttctcttaagcacagagcgaccatgccatgcagtctgtcaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 caaacctaccaaaaagttttctcttaagcacagagcgaccatgccatgcagtctgtcaga 444

                                                                       
Query: 421 tccagttcgtaaagacagacacaagttggtcaactccttccttacaacagccagtaagtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tccagttcgtaaagacagacacaagttggtcaactccttccttacaacagccagtaagtt 384

                                                                       
Query: 481 tccaggcactgaggaatcctctggaatcactattgctacgatttttacctcttgtatttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 383 tccaggcactgaggaatcctctggaatcactattgctacgatttttacctcttatatttt 324

                                                                       
Query: 541 ttggttttctacaccagtattctggaattgaggaaagcattgagttatttaattaagctc 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 323 ttggttttctacaccagtattctggaattgaggaaagcattgagttatttaattcagctc 264

                                                                       
Query: 601 acagcttactccatctgattgtttggggtgctttctgatagactttggaagctcaaacag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 acagcttactccatctgattgtttggggtgctttctgatagactttggaagctcaaacag 204

              
Query: 661 gca 663
           |||
Sbjct: 203 gca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)