BAC Information

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BAC

Clone NameMSMg01-153F05
Chromosome11 (Build37)
Map Location 118,545,961 - 118,546,179
singlet/doubletsinglet
Overlap geneD11Bwg0517e
Upstream geneTnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik
Downstream geneEnpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153F05.T7 (MSMg01no153_f05.b1)MSMg01-153F05.TJ (MSMg01no153_f05.g1)
ACCAG354956AG354957
length727738
length of high quality
(start - end)
219 (162 - 380)197 (74 - 270)
definitionCHROMAT_FILE: MSMg01no153_f05.b1 PHD_FILE: MSMg01no153_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:40 2005CHROMAT_FILE: MSMg01no153_f05.g1 PHD_FILE: MSMg01no153_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATTTTCTCCCGTTAGTGAAAGGCCTTGGTGGGTACTGGATCTCC
TCATGACAGTGCTCCTCCTATGAGGGAGGACATGGGGCTGTCCTCTGGCA
TGTTCTAGGCAGCCCCTCTGGTACACACACAGATAGCTAGGGTTGACAAG
TTCTCTTGCAGATGGACGTGCAGGTGTCTGGCCTGTAACCTCCCCAAGCT
CTGCGGATTTGGAAACACCCTGTCCCCAGCCTGGAGTTCTGTTGTATGGG
AGGAGGGAACAGGAGGAGTGGTAGCTCAAGGAGAGGAAGCTACAGCTTCC
CCCTGCAATGCAGCTACTAGGCACCACCTGGCAGGGTGCTGGCTACTAAA
CCCCAACTACACCAAAGCCTTTTTGGGGATCCTGAGGCTGGAGCCCAGCC
CTGGATAGATCCCTCTGTTCCCATTCCAGGGGCTGGCTCTGATAACGAGA
CAGTGAGATGACCAAGAAATAGCCATGTGTGAGCTCTCCTCTCCCTGTGC
CCAGCTTCCCTTGGCAAACTGACCAGGTGGGCACGGCAACCCTGTGTGCA
GAGTCAAAAGCTCTATGAGTTAAACTGGATGGATCTTTTTCTGCAAGCTT
GTTGTGGATGAGAAAGGTGCCTCGTTATGCGCTGGCCTACCTGAACTATG
CCCCCTGATACCCCCCTTCTTTTTTTA
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCATTGGTAGGAGAGCCTCAGGGATGT
TTGTTTCTGCCTCCCTAGTGTTTCCCCTTGGGGCCTGGGTATCCAACCCA
GGTTTTCATGCTTGTGAAGCAAGCCCTTTACCAACCAAGTCATCTCTCTG
GTTCTGGCAAGCAGTTTTGACAAGTAGAGGAGAAGGGGTGTGGGAAAATG
GGGAGGGAGAATCCTGGTGACAGTAGTGGGCAGATGGAATGGAGCCCACT
GGGGTCCCCAAGGAAAATGCATAACACACACCCTGAACTTCTCCAGAGAG
GCCTGGGGACTTGCACCTGTTGCTTTGAGAGCCCAATGCTCAGGAATTTC
TGGACTTGTAGACCTGCTAGGCAGAGAGACCCAGACAGTGTTGTCAACCA
TGATGGGCCTGGCGTGTAATGCGACGTTGTGATGCAATATGATTAGGTCT
AGAATGTAAATTCTGATGACCCTTCATTCCACAGATGACGATATTAACGA
TTAATGGTAAAGAATCCTGATACTTAAAAAATCTTATTAATCCTCCTAAA
TTCTGCTTTTGCAGATAATCATAAACAAAAATACTGTTTATACATGGTTT
AATAAACAATCATCATTATACTCTATTCATTCTTTCTTTTTTTCTAATGA
CCTCCACACACCTTATTCTTCCCTCTATTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_f05.b1 MSMg01no153_f05.b1 CHROMAT_FILE:
MSMg01no153_f05.b1 PHD_FILE: MSMg01no153_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:40 2005
         (219 letters)



>mm_chr11_118545761_118546379
          Length = 619

 Score =  385 bits (199), Expect = e-111
 Identities = 214/219 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcccctctggtacacacacagatagctagggttgacaagttctcttgcagatggacgtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcccctctggtacacacacagatagctagggttgacaagttctcttgcagatggacgtgc 260

                                                                       
Query: 61  aggtgtctggcctgtaacctccccaagctctgcggatttggaaacaccctgtccccagcc 120
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 261 aggtgtctggcctgtaacctccccaagctctgcaaatttggaaacaccctgtccccagcc 320

                                                                       
Query: 121 tggagttctgttgtatgggaggagggaacaggaggagtggtagctcaaggagaggaagct 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 tggagttctgttgtatgggaggagggaacaggaggagtgggagctcaaggagaggaagct 380

                                                  
Query: 181 acagcttccccctgcaatgcagctactaggcaccacctg 219
           ||||| |||||||||||||||||||| ||||||||||||
Sbjct: 381 acagcctccccctgcaatgcagctacaaggcaccacctg 419


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)