Query= MSMg01no153_h13.b1 MSMg01no153_h13.b1 CHROMAT_FILE:
MSMg01no153_h13.b1 PHD_FILE: MSMg01no153_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:51 2005
(439 letters)
>mm_chr11_81160808_81161646
Length = 839
Score = 795 bits (411), Expect = 0.0
Identities = 432/439 (98%)
Strand = Plus / Minus
Query: 1 aagttgacttgattcaagactccacatgggaattttccctaagaaaataattcagctcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aagttgacttgattcaagactccacatgggaattttccctaagaaaataattcagctcag 580
Query: 61 aaatcttccttatagatttcgcaggccaacaaatgaatctgcctggtgggaaacactgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aaatcttccttatagatttcgcaggccaacaaatgaatctgcctggtgggaaacactgtg 520
Query: 121 ttagaaagcacaggccaccctgtggcatgtagtataaccatcaattactataaccaggaa 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 519 ttagaaagcacaggccaccctgtggcatgtagtataatcatcaattactataaccaggaa 460
Query: 181 gactatacaatgacatgggagcactttcccaatgattctaatcaagggctaacaattttt 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gactatacaatgacatgggaacactttcccaatgattctaatcaagggctaacaattttt 400
Query: 241 tttttctgcaaatggctacgtaattgtagtttgggctttataaggcgagctatccaattt 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tttttctgcaaaaggctacgtaattgtagtttgggctttataaggcgagctatccaattt 340
Query: 301 gtcaatgtgaaggtagacacagactggatattcacgagtgggcatacacgtgttcctgtg 360
|||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 339 gtcaatgtgaaggtagccacagactggatattcacgagtgggtatgcacgtgttcctgtg 280
Query: 361 aagttttatttatgaatcaagtagtgactgtcagttagacacggacagaaacagtgagca 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 279 aagttttatttatgaatcaagtagtgactgtcagttagacacggacaggaacagtgagca 220
Query: 421 gtgagcaggttacaccaaa 439
|||||||||||||||||||
Sbjct: 219 gtgagcaggttacaccaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space: 356900
Effective search space used: 356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no153_h13.g1 MSMg01no153_h13.g1 CHROMAT_FILE:
MSMg01no153_h13.g1 PHD_FILE: MSMg01no153_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:51 2005
(387 letters)
>mm_chr11_81004054_81004836
Length = 783
Score = 656 bits (339), Expect = 0.0
Identities = 374/387 (96%), Gaps = 4/387 (1%)
Strand = Plus / Plus
Query: 1 ctggcaccatgggagaacagctattaagtagatattcacacaaaggattaattaaaggag 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 ctggcaccatgggagaacagctattaagtagatattcccacaaaggattaattaaaggag 260
Query: 61 tctgataatggtttgggagaaagacaggagggatgtctgagagcgtgtcaccagctgccc 120
||||||| ||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tctgatagtggctt-ggagaaagacaggagggatgtctgagagcgtgtcaccaactgccc 319
Query: 121 taaactaggtcaggatgctgaggggaaactctgcaggggagggggagtaatttcaaactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taaactaggtcaggatgctgaggggaaactctgcaggggagggggagtaatttcaaactg 379
Query: 181 gaacctgaaggctaagcaggttactgagtgaagaacataggagaagtcaatccaggcagg 240
||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 380 gaacctgaaggctgagcaggttactgggtgaagaacat---agaagtcaatccaggcagg 436
Query: 241 aaggttatagcacactctgaggcaggaagggacacagtgttgagcggttgaagagtgaaa 300
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aagggtagagcacactctgaggcaggaagggacacagtgttgagcggttgaagagtgaaa 496
Query: 301 caatgaatggagatcggcccaaggacagccagggatgctgtcagctccagatcccagagg 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 497 caatgaatggagatcggcccaaagacagccagggatgctgtcagctccagatcccagagg 556
Query: 361 gccctgtgaattatgggaaggacttag 387
|||||||||||||||||||||||||||
Sbjct: 557 gccctgtgaattatgggaaggacttag 583
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 783
Length adjustment: 9
Effective length of query: 378
Effective length of database: 774
Effective search space: 292572
Effective search space used: 292572
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
