BAC Information

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BAC

Clone NameMSMg01-153I04
Chromosome11 (Build37)
Map Location 68,335,591 - 68,336,141
singlet/doubletsinglet
Overlap geneBB220380
Upstream geneGas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8, Ntn1, Pik3r5
Downstream geneBC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153I04.T7 (MSMg01no153_i04.b1)MSMg01-153I04.TJ (MSMg01no153_i04.g1)
ACCAG355090AG355091
length696742
length of high quality
(start - end)
551 (72 - 622)251 (74 - 324)
definitionCHROMAT_FILE: MSMg01no153_i04.b1 PHD_FILE: MSMg01no153_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:54 2005CHROMAT_FILE: MSMg01no153_i04.g1 PHD_FILE: MSMg01no153_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGGCTAATTTGCAGAGATGGGGCCCTGCTCAGTTGAGTGTCTAGG
TGGGTAGACATGGCTGTCACGTTCTGTGAACCTTCAGATTTGGGGAAGCT
GGGAATCGGGCCTAGACAATTGCCTCTCAGGGATGAGTGAGAGTTGGGAG
GAAAGTGGGGGCTTCAGAGATGGCAATGATCACACTCTGGAGAATGTGGG
TGCCTCATAGCCACTTCGCGGGGCTGCCTGATAACCAGCAGAGTGCAGGA
TACCTCAGCCTTAATGGCTTACCTGGAGCTACCTACCATCCCTGATGTTT
ACAGATATAGCCTCTACCCTTCTAAAGGAATTAGAGACAATGAAGGTGTG
CACGTAGTAAAACACAAAGCAGAGGCAGCAAAGAGGAAGCAGGAAGTGAG
GTCCCGGCCCCTTGACACAGGCTGATGTTTGGGACTGGACTCTAACTCAG
CTGCGATTTTCTTGGCAGCCAAGTCATAAAGGGAAGCCCTGAGGTATGTC
GTTTGTGTTGTCTGGTGACTCGAGAAGACAAATTACTTGTGTGTAGAAAC
ACTCTTGGTTGCTGGTTACTGCAAGGTAAATCTGCCCTTGTGGGGAGCAC
TTCCCAGACTTCCCATCCTTGCCTAGATCCTCCAAGGAGTGTACGC
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATCTGATCTCTTTAAAAACATAGTAATAAG
AAAGTGGTTTCATTTTAATTAATCCCATGTATGGAATATAGGGCTGTTTT
AGATCATCCATAGCTCAGCAGCTGACTATGATTTGTCTGGTGCTCTAGCA
GTGGTGTGACTTTGCCAGTTGCAGATCGTTTCTGTGATTGTGTGATGTTG
GGAATTCCGAGGGCTTTTCAGAGGGTATACAAATGCTATGACTCTAAGAG
GTGTGGGGGTGAAGGTGGGGGTGGTTTTTTCTTCTTTCTCCCCTCTACAC
TTCTCTATTTTCTTCTCCTCCCCTCCTTTTTGCCCTGTTTCCCTTCTCCC
CTCCTTCGTCTCCTCTTTCCTCTTTTCCCTCTTCTCCTGTCTTTTTCCCT
CTCTTTTCTTCTTTTTCCCCTCGTCTTCCCCTCCTTCATCCCCTTTATCC
CGTCGCTTTCTCCTTCTCCCTCTCCTTTTTTGTCTCCCTCCTTCCTCCTC
TTTTTCTATTTCCTCCCTTTTTTTTCTTCCCTCTGTCTCACATTATATCC
TTTTTTCGCTTTTCTCCTCTTGTTGTTCCCTTTTCTCCTCCCACTCCTCT
TTCCTCTTCTCTTCCTCCTCTTCTCCCTCTTTTCTCCTCTTCTCCTTTTA
TTCCTCCCCTTCTGATCTTTTTCCTTTCTCCCTCCTCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_i04.b1 MSMg01no153_i04.b1 CHROMAT_FILE:
MSMg01no153_i04.b1 PHD_FILE: MSMg01no153_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:54 2005
         (551 letters)



>mm_chr11_68335391_68336341
          Length = 951

 Score = 1019 bits (527), Expect = 0.0
 Identities = 545/551 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggggccctgctcagttgagtgtctaggtgggtagacatggctgtcacgttctgtgaac 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggggccctgctcagtagagtgtctaggtgggtagacatggctgtcacgttctgtgaac 260

                                                                       
Query: 61  cttcagatttggggaagctgggaatcgggcctagacaattgcctctcagggatgagtgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcagatttggggaagctgggaatcgggcctagacaattgcctctcagggatgagtgag 320

                                                                       
Query: 121 agttgggaggaaagtgggggcttcagagatggcaatgatcacactctggagaatgtgggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 agttgggaggaaagtgggggcttcagagatggcaatgatcacactctggagaatgtgggc 380

                                                                       
Query: 181 gcctcatagccacttcgcggggctgcctgataaccagcagagtgcaggatacctcagcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctcatagccacttcgcggggctgcctgataaccagcagagtgcaggatacctcagcct 440

                                                                       
Query: 241 taatggcttacctggagctacctaccatccctgatgtttacagatatagcctctaccctt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 taatggcttacctggagctacctaccatccctgatgtttacagatatagcctctacactt 500

                                                                       
Query: 301 ctaaaggaattagagacaatgaaggtgtgcacgtagtaaaacacaaagcagaggcagcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaaaggaattagagacaatgaaggtgtgcacgtagtaaaacacaaagcagaggcagcaa 560

                                                                       
Query: 361 agaggaagcaggaagtgaggtcccggccccttgacacaggctgatgtttgggactggact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaggaagcaggaagtgaggtcccggccccttgacacaggctgatgtttgggactggact 620

                                                                       
Query: 421 ctaactcagctgcgattttcttggcagccaagtcataaagggaagccctgaggtatgtcg 480
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctaactcagctgcgacttgcttggcagccaagtcataaagggaagccctgaggtatgtcg 680

                                                                       
Query: 481 tttgtgttgtctggtgactcgagaagacaaattacttgtgtgtagaaacactcttggttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttgtgttgtctggtgactcgagaagacaaattacttgtgtgtagaaacactcttggttg 740

                      
Query: 541 ctggttactgc 551
            ||||||||||
Sbjct: 741 ttggttactgc 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)