BAC Information

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BAC

Clone NameMSMg01-154H03
Chromosome11 (Build37)
Map Location 105,227,738 - 105,227,949
singlet/doubletsinglet
Overlap genenone
Upstream gene1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2
Downstream geneRnf190, EG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154H03.T7 (MSMg01no154_h03.b1)MSMg01-154H03.TJ (MSMg01no154_h03.g1)
ACCAG355737AG355738
length716709
length of high quality
(start - end)
459 (43 - 501)212 (73 - 284)
definitionCHROMAT_FILE: MSMg01no154_h03.b1 PHD_FILE: MSMg01no154_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:04 2005CHROMAT_FILE: MSMg01no154_h03.g1 PHD_FILE: MSMg01no154_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCGAAGAGGATCCGCGGA
ATTCTAGGCATTCCTAGAATCTATCATTGCCTTATTCAATAACCTTATAG
TTTTAAAAACGCTTTTATTTATTTGTATGTCTGTGTATTCATGTGAATCT
ATGACACAAGTGCCTATAGAAGTCAGAAGAAGGCATTAGATCCCCTGGAG
CTGGAGTCATAGGTGGTTGTGAGCTGTTGACATGGGTATTGGGAACTGAA
CTCAGGTCCTTTGAAAGAGCCGAAGTGCACTTAAACTGGTGAACTATTTA
TCCAGCCCCTATACTTTAGTTTTTAATTAAAAGTTAAAAATCCGTGTGTG
GGTATACCCATTAATGTATGTGTGAATGTGTACCATAGCATGCATGTAGA
GGTCAGAGAACAAATTTTGAAATTGGTTCTCTCCGTCCACACAGGGTCTA
CTACACTCACCAGACTCACACTGCAAGTGCCTCTGCGTACTGAACATCTC
ACTGCCCAGTAGCTTTATTATTCTAAAAACAACATTGTAGTGTGATCAAC
AAAATACATAATACCACATTATGTCGGGTTTTCTTCTGATTCTTTGAAGC
ATTTAGTACTATCTGATCCCTACTATATTGGCAAGTTTGCCCCCGATTGT
TCCCACTTTATTTGAAAACCTCTTCTTATACCTTTTTATTTTTTTGTCTC
CCCAGTGTTTTTTGCN
CATTATAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCATCCCACTTTTGCACACTTCTCCAGG
GCAGATAGATCTCCAGCCAGGATCTCCCGTTCTGCTGCTGAGAAGGCCTG
ACCTTTGACCTCGCAGGGTGTGTCCTTTACCCTCCGTCCCTCCAGCTTTG
GCAATGTTGCTGCCATGGCTTTTGTCAGCTGAAATGCAAAGATGATGCTT
ATCCTGAATCTCAAAGATCATGGCAGACAGACTGGGGTGAGTGGTCTGGG
AAGGTAGACCCCACGCTTAATACACAGCGTGGAGATATGGGAACCTGCGT
GGCCAGAAGATGTCAAGAAGCTGTGCGTTAGGGGTTGGCAGGAAGTGAGC
CTGACGTGTATGCAGGGTGCTTTGTTGAAATTCTGAGGGGTGGCTCTGGA
GGCTACTGGACAGTTTCCAGCCCGGGCCTGATATCCTGCTATTTGTGATA
TACACTGCATACTCTTGGAGGATAGACTGCAATAATCCAGTTGCGTTTCA
TATAACATATAAAAGGTCCATTTTACAACATGGTTGACAATATTTCTTTC
ATTTCTCCCCCGCTCGACTCTTCTTTGCCCCCTGTGCGTACCAACCCCCC
TGTTTTTTCCTCTCCACCCTTACTTTCTCTCCCCTTTTTTCCCCCTCCTT
ATTCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_h03.g1 MSMg01no154_h03.g1 CHROMAT_FILE:
MSMg01no154_h03.g1 PHD_FILE: MSMg01no154_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:05 2005
         (212 letters)



>mm_chr11_105227538_105228149
          Length = 612

 Score =  364 bits (188), Expect = e-105
 Identities = 206/212 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatcccacttttgcacacttctccagggcagatagatctccagccaggatctcccgttc 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 412 tcatcccacttttgcacacttctccagggcagatagatctccagctaggatctcccgttc 353

                                                                       
Query: 61  tgctgctgagaaggcctgacctttgacctcgcagggtgtgtcctttaccctccgtccctc 120
           |||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||
Sbjct: 352 tgctgctgagaaggcctgacctttgacctcgcagggtgtgtccttcgccctctgtccctc 293

                                                                       
Query: 121 cagctttggcaatgttgctgccatggcttttgtcagctgaaatgcaaagatgatgcttat 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 292 ctgctttggcaatgttgctgccatggcttttgtcagctgaaatgcaaagatgatgcttag 233

                                           
Query: 181 cctgaatctcaaagatcatggcagacagactg 212
           ||||||||||||||||||||||||||||||||
Sbjct: 232 cctgaatctcaaagatcatggcagacagactg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 612
Length adjustment: 9
Effective length of query: 203
Effective length of database: 603
Effective search space:   122409
Effective search space used:   122409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)