BAC Information

Click to search

BAC

Clone NameMSMg01-154J09
Chromosome11 (Build37)
Map Location 89,476,892 - 89,477,293
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
Downstream genePctp, Tmem100, LOC100039104, Mmd, Hlf, Stxbp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154J09.T7 (MSMg01no154_j09.b1)MSMg01-154J09.TJ (MSMg01no154_j09.g1)
ACCAG355838AG355839
length700697
length of high quality
(start - end)
250 (66 - 315)402 (70 - 471)
definitionCHROMAT_FILE: MSMg01no154_j09.b1 PHD_FILE: MSMg01no154_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:15 2005CHROMAT_FILE: MSMg01no154_j09.g1 PHD_FILE: MSMg01no154_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGG
AATTCACTTGTTTCTTTCTTTTTCCCCTTTTCTTTCTTTTTCTCTCTTTC
TCTCTCTCTTTCTTTCTTTCTTTCTCTCTCTCTTCCTTTCTTTCTTTCTA
TCTTCCTTCCTTCCTTCCTGTCTTTCTTTCTTTCTTTCTCTCTCTCTCTC
TTTCTTTCTCTCTTCCTTCCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTT
TCTTCTTTCTTTCTTTCTTTCTTTTTTTTGATAAGGCCTTTTGTACTCCA
ATGAAATCACTGTATAAATTAGGTTAGCCTTGAACTACTGATCCTCCTGT
CTCCACCCAGCAAGGTGTCAGTCAATATGCTGTGCTTTTGAGTAGTCTCC
TGAGGGATCAGCTCAAGGTATCTTAGCTCCTTATCTTTACACATTGTCTG
CCTGCACGTTGTAGCTGGTTCCAGCCTGATCCACTGACTCTGAATGACAC
TGGACATTCCCCAGCAATGGGATCCCACTCAAGTTCTTTTGCTTATCTTT
GCCTAGCGTCATCCTTCTTAATAGAGGTATGCCACCACAACTGTTTCCCT
GAATGCCTCCTTCTGATAAAGGCAGGGTACACTATATGACCCTTCATTTT
TGGCAACTGTCCCCTCAATTTATTATTGTTTCTAAACCCTAATATCCAAC

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTGCCTGCGGAATTCTCGCTGGCATACAGGACGGCTCAAGAG
TAGCCTGTCAAGATCTGCTTTTGGGTCCACCAAAGCCATGATTTTTCTAA
GGACCCTTAGGAGAAATATTACTGGGGCCCTGAAGCGGCCCTATTTTCCC
AAGCATGGAGACTCTTCTGACAAGATGCCTTCCAAGGGCTGGATTTCTTT
CTGTATCCTTGTAACTAGAAGGCATATGGATTGATGGCCCAATTTTAGCA
CCTGTGTAGAGTCTTGTGGATATGTTTGGTTTATAACATCTACTATCTAA
TTTTTCTCTCTCCTCCATCTTGCCCCAGATTCCCTCAATTATTTTCTGCA
ACTGTATATTTTTATATTACTTTGCGCATTTCAATTTGAAAATGTTCCTA
AGAAGTGAGAGGAAGGCAAGCCAGTATAGATGGCCCAGCAAAGCATTTAG
AGAACTCAGTTGCAGGTTTAATGTCTTTGTCTCTTTTCTAATGAGAAGAG
GATCCTGCCAAGAGCCTGACTACTGTTTTCACCACTGGATAGACAGGCGT
GTAACTTTCTATGGATTGCTTGATTTTCTCCAGGGAACAATATCGAATCT
GTGGCCCGGTTTACAGGGTAAACAAGCATACACACTCGGTTTCCCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_j09.g1 MSMg01no154_j09.g1 CHROMAT_FILE:
MSMg01no154_j09.g1 PHD_FILE: MSMg01no154_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:15 2005
         (402 letters)



>mm_chr11_89476692_89477493
          Length = 802

 Score =  762 bits (394), Expect = 0.0
 Identities = 400/402 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctcgctggcatacaggacggctcaagagtagcctgtcaagatctgcttttgggtcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctcgctggcatacaggacggctcaagagtagcctgtcaagatctgcttttgggtcca 260

                                                                       
Query: 61  ccaaagccatgatttttctaaggacccttaggagaaatattactggggccctgaagcggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaagccatgatttttctaaggacccttaggagaaatattactggggccctgaagcggc 320

                                                                       
Query: 121 cctattttcccaagcatggagactcttctgacaagatgccttccaagggctggatttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctattttcccaagcatggagactcttctgacaagatgccttccaagggctggatttctt 380

                                                                       
Query: 181 tctgtatccttgtaactagaaggcatatggattgatggcccaattttagcacctgtgtag 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgtatccttgtaactagaaggaatatggattgatggcccaattttagcacctgtgtag 440

                                                                       
Query: 241 agtcttgtggatatgtttggtttataacatctactatctaatttttctctctcctccatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtcttgtggatatgtttggtttataacatctactatctaatttttctctctcctccatc 500

                                                                       
Query: 301 ttgccccagattccctcaattattttctgcaactgtatatttttatattactttgcgcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 ttgccccagattccctcaattattttctgcaactgtatatttttatattactttgtgcat 560

                                                     
Query: 361 ttcaatttgaaaatgttcctaagaagtgagaggaaggcaagc 402
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcaatttgaaaatgttcctaagaagtgagaggaaggcaagc 602


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)