BAC Information

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BAC

Clone NameMSMg01-154L03
Chromosome11 (Build37)
Map Location 31,650,477 - 31,651,094
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2, Stc2, 2310022M17Rik
Downstream geneCpeb4, 4930524B15Rik, Nsg2, LOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154L03.T7 (MSMg01no154_l03.b1)MSMg01-154L03.TJ (MSMg01no154_l03.g1)
ACCAG355916AG355917
length751710
length of high quality
(start - end)
328 (46 - 373)618 (74 - 691)
definitionCHROMAT_FILE: MSMg01no154_l03.b1 PHD_FILE: MSMg01no154_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:24 2005CHROMAT_FILE: MSMg01no154_l03.g1 PHD_FILE: MSMg01no154_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCATATTCTCAAAGAAGACCTAATACCAATACTCTTCAAACTA
TTCCACAAAATAGAAACAGAAGGAGCACTACCCAATTCGTTCTATGAAGG
CACAGTTATACTGATACCAAAACCATATAAAGATTCAACAATGAAAGAGA
ACTTCAGACCAATTTCCCTTATGAATATCGATGAAAAAATACACAATAAA
ATTCTTGCAAACCAAATCCAAAAATGGTCGATCATTCACCATGACCAAGT
AGGATTCATCTCAGAGATGGAGAGATGGTTAAATATATGGAAATCTATCA
GCATAATTCACTATATAAACAACCCCGAGGAAAAACGCCACAAAATTTTT
TTGATAAAGAGGGAAAAAAAATTCTTCGATAAAATCCAACTTCTCCTTTG
GTTAAGGGTTAAAAAAAAAAATATATTTTTCCTGTTTCCCCACCTTTTTA
TAAAAGATTATCACCCTTCGGCCACTTTGGGGAAACTGCAGCGATTTTTA
TAGGAATAAAAATTTTTTAATTTTTTTCCACATCCAATATCACTCATAGA
ACCGGCCCTCTTTATCCCTTTTATTCCTATAACTAATCAACACCCCTTGG
GGCCTGACACTAGTTGCCCCCGTGCTTGCCGCCGTTTTTATTATGCACAC
CGACGCTAAAATCGTTGTGGTTTTTTTTTTTTTCCCCCATCACATCTCCC
T
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACAGACTTCAACTTGCCACTTCCTGA
CTAAACACTAAACAGGACATAAATGAATTCAACCTCTATGTTTCTTGTAG
GTGGAAGAAAACAAAAAACAAAACAAAACACCAGAAAGCAAAGAAAGTGG
CGATCTCTAAGAGCACTGGGTGAGGTCTTGGAGTCAGACACAGGGAATGC
TGGAATGCTACCCAGAGGCAATGGATTTACATAAGATCTGGGCTGCAGTG
AGGCATGGCTCAGTCTGAGTCCCAGTTGAGTTGACTGGGCAAGTGGGGTA
CAGCATGAAGGTCTGACCTGCAGAGCAGCAATAAATTGAATCATTGGGAA
CTGGGGCAGCTGAGGGAGGGGTCAGGAGATAGAGATCCAGTCTGTCAGCT
AAACAGCTAGGAAGGACCCCAGGAACAGAGAGGACTAGAAGGTTCCAGCG
AACAGTGATGCATTCTTAATAGGATGTGCTTGGATGTGCATTAGTCCTTT
GCTGTTCACAGAGGAGAGACGTCTGGAGCCCTGAATAACTGACAGTCCCT
GATATAAAATGGCTGCCATCACACATGAGGTGACAAAGTCCTTTCATATA
GGTCTTTGCATTCCTAACACATAAATAGCATGCAAATGGTTACAGCTTAG
AAGAGGATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_l03.g1 MSMg01no154_l03.g1 CHROMAT_FILE:
MSMg01no154_l03.g1 PHD_FILE: MSMg01no154_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:24 2005
         (618 letters)



>mm_chr11_31650277_31651294
          Length = 1018

 Score = 1195 bits (618), Expect = 0.0
 Identities = 618/618 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagacttcaacttgccacttcctgactaaacactaaacaggacataaatgaattcaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 cacagacttcaacttgccacttcctgactaaacactaaacaggacataaatgaattcaac 759

                                                                       
Query: 61  ctctatgtttcttgtaggtggaagaaaacaaaaaacaaaacaaaacaccagaaagcaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ctctatgtttcttgtaggtggaagaaaacaaaaaacaaaacaaaacaccagaaagcaaag 699

                                                                       
Query: 121 aaagtggcgatctctaagagcactgggtgaggtcttggagtcagacacagggaatgctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 aaagtggcgatctctaagagcactgggtgaggtcttggagtcagacacagggaatgctgg 639

                                                                       
Query: 181 aatgctacccagaggcaatggatttacataagatctgggctgcagtgaggcatggctcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 aatgctacccagaggcaatggatttacataagatctgggctgcagtgaggcatggctcag 579

                                                                       
Query: 241 tctgagtcccagttgagttgactgggcaagtggggtacagcatgaaggtctgacctgcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tctgagtcccagttgagttgactgggcaagtggggtacagcatgaaggtctgacctgcag 519

                                                                       
Query: 301 agcagcaataaattgaatcattgggaactggggcagctgagggaggggtcaggagataga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 agcagcaataaattgaatcattgggaactggggcagctgagggaggggtcaggagataga 459

                                                                       
Query: 361 gatccagtctgtcagctaaacagctaggaaggaccccaggaacagagaggactagaaggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gatccagtctgtcagctaaacagctaggaaggaccccaggaacagagaggactagaaggt 399

                                                                       
Query: 421 tccagcgaacagtgatgcattcttaataggatgtgcttggatgtgcattagtcctttgct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tccagcgaacagtgatgcattcttaataggatgtgcttggatgtgcattagtcctttgct 339

                                                                       
Query: 481 gttcacagaggagagacgtctggagccctgaataactgacagtccctgatataaaatggc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gttcacagaggagagacgtctggagccctgaataactgacagtccctgatataaaatggc 279

                                                                       
Query: 541 tgccatcacacatgaggtgacaaagtcctttcatataggtctttgcattcctaacacata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tgccatcacacatgaggtgacaaagtcctttcatataggtctttgcattcctaacacata 219

                             
Query: 601 aatagcatgcaaatggtt 618
           ||||||||||||||||||
Sbjct: 218 aatagcatgcaaatggtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)