BAC Information

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BAC

Clone NameMSMg01-155C16
Chromosome11 (Build37)
Map Location 105,490,526 - 105,491,037
singlet/doubletsinglet
Overlap geneTanc2
Upstream geneItgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807
Downstream geneLOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155C16.T7 (MSMg01no155_c16.b1)MSMg01-155C16.TJ (MSMg01no155_c16.g1)
ACCAG356259AG356260
length738734
length of high quality
(start - end)
508 (71 - 578)254 (69 - 322)
definitionCHROMAT_FILE: MSMg01no155_c16.b1 PHD_FILE: MSMg01no155_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:01 2005CHROMAT_FILE: MSMg01no155_c16.g1 PHD_FILE: MSMg01no155_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCGAGAGAACCGCGGAAT
TCACTATGTGTACCAAACTGGCCTCAGAGTCACAGAAAGCCACCTGCCTC
TGCCTCAGAGTGCTGGGGTTCCAGGCATATGGCATCACACTTGGCTTACA
CTTGCATTTTTAAAGTAATTGATATGTAGCAATAATGCCCAATTAGACCA
GTTTAAATGCCTTAACTTAATCTTTTTCAAAAATTTGCTTTTTATTGAGG
AACCCTTGCTAGTTTTAGGAAAACCTGCTGTCCCACTTTGAGATATGAGC
CAAACCAGAATAGAAAAAAAAATGTCTAGGGCCAGACAAAGCCTTCTGGT
TTTAGAATGACAGGTGTATGAAGCACACAGACCTCTTCATCAGACTGCTT
TCTTTGCTTTGGTGCCAAGTCAAATGCATTGCCACCCTAGTGAGGGGAAG
CAGGGACAGCTGCCTGCCTCTGGCTGAGGATCAACACAGAACAGTCCTCT
GAAATTGCTAGCAGTCACTCACTGCCTTTCTGAACTACACCTACTAGGTG
GCAAGCTGACACAGTAATGACAACACAGTAAACAGCACCACCACTGGCAA
CTGACAAAACAGTTTTGGCTTTAAAGCACCTTGCTTAAAGTCACACTTAG
TAAATTGGATTTTAACAGGAATATGTATTACTCTAATAACACCTGACCCT
GAAACATAAAAAAAAAAAGCTGAGTGTGGTGATACCCT
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCCTGAAATTCTCATTGCTATTGCCACTAAGACCCTACCT
ATGTTGTAGCCTTAGCTAGATCATAGGTGATCATTGGTTTCTTTCTTCCA
TCTTTCTTTCTTTCTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCGTCCTTCTTCTT
CTTCTTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTCTTCTTCATCTTCTACTT
CCTCTTCTTCTTTTTTTTCTTCCCCCTCCTCTTCATAGTCCTCTTCTTCT
TAATCTTCTTCCCCCCCCCCTACCGGAATACATTTCCCATATCGCCCCAT
AATGCGTCACTTTATCTCCCTATTAGGAATGCCTATTTATTAGCCACACT
CTCTTTTGTTTTCCCAACGCATGTCGCCTATATAATGTCCTTTTGGTCCA
GTATTGGCACCCATCTTGGCTTTCTCCATCACCTCTGTATGTTTACCCGT
TTCCTGTTTTTTTTATACGCTTGAGGTTCTTATTCCCGCCTTTTTTCCGC
CTTTTTCTCCTTTTTTTTTCCCCGCCTCCTATTTCCCCTCAGCACCCCCC
CCCCCTTTGCCCTTTCGTTTCCGTTATATCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_c16.b1 MSMg01no155_c16.b1 CHROMAT_FILE:
MSMg01no155_c16.b1 PHD_FILE: MSMg01no155_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:01 2005
         (508 letters)



>mm_chr11_105490250_105491161
          Length = 912

 Score =  901 bits (466), Expect = 0.0
 Identities = 499/512 (97%), Gaps = 4/512 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcctcagagtcacagaaagccacctgcctctgcctcagagtgctggggttccaggcatat 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||
Sbjct: 788 gcctcagagtcacagaaagccacctgcctctgcctcagaatgctggggttaaaggcatat 729

                                                                       
Query: 61  ggcatcacacttggcttacacttgcatttttaaagtaattgatatgtagcaataatgccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ggcatcacacttggcttacacttgcatttttaaagtaattgatatgtagcaataatgccc 669

                                                                       
Query: 121 aattagaccagtttaaatgccttaacttaatctttttcaaaaatttgctttttattgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aattagaccagtttaaatgccttaacttaatctttttcaaaaatttgctttttattgagg 609

                                                                       
Query: 181 aacccttgctagttttaggaaaacctgctgtcccactttgagatatgagccaaaccagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 608 aacccttgctagttttaggaaaacctgctgtcccactttgagatatgggccaaaccagaa 549

                                                                       
Query: 241 tag----aaaaaaaaatgtctagggccagacaaagccttctggttttagaatgacaggtg 296
           |||    ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 548 tagaaaaaaaaaaaaatgtctagggccagacaaagccttctggttttagaatgacagggg 489

                                                                       
Query: 297 tatgaagcacacagacctcttcatcagactgctttctttgctttggtgccaagtcaaatg 356
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 488 aatgaagcacacagacctcttcatcagactgctttctttgctttggtgtcaagtcaaatg 429

                                                                       
Query: 357 cattgccaccctagtgaggggaagcagggacagctgcctgcctctggctgaggatcaaca 416
           || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 428 cagtgccaccctagtgaggggaagcagggatagctgcctgcctctggctgaggatcaaca 369

                                                                       
Query: 417 cagaacagtcctctgaaattgctagcagtcactcactgcctttctgaactacacctacta 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cagaacagtcctctgaaattgctagcagtcactcactgcctttctgaactacacctacta 309

                                           
Query: 477 ggtggcaagctgacacagtaatgacaacacag 508
           ||||||||||||||||||||||||||||||||
Sbjct: 308 ggtggcaagctgacacagtaatgacaacacag 277


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 912
Length adjustment: 10
Effective length of query: 498
Effective length of database: 902
Effective search space:   449196
Effective search space used:   449196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)