BAC Information

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BAC

Clone NameMSMg01-155J01
Chromosome11 (Build37)
Map Location 118,509,931 - 118,510,184
singlet/doubletsinglet
Overlap geneD11Bwg0517e
Upstream geneTnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17, Pscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik
Downstream geneEnpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155J01.T7 (MSMg01no155_j01.b1)MSMg01-155J01.TJ (MSMg01no155_j01.g1)
ACCAG356537AG356538
length750772
length of high quality
(start - end)
---254 (81 - 334)
definitionCHROMAT_FILE: MSMg01no155_j01.b1 PHD_FILE: MSMg01no155_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:30 2005CHROMAT_FILE: MSMg01no155_j01.g1 PHD_FILE: MSMg01no155_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATAATTTGCGCGCGCTATACCACTCACTATTGGGAGAGGATCCGCGGA
ATTCCACCTCTTCCGATAGAAAGCATGGAGCACAGTGAAATGCAGAACTC
ATTCTTATCTCCTGGAAAGCACTGTGTCTGCTTAGGTGTTACTCTTGCTG
TGATGAGACTCCATACTCAAACGCAATTTGAGCCACAAAAGAAATGCTTT
ACTTGCCTCACACTTCCAGATCATTGTTCATCAAGGGAAGGCTGTCGAGA
CAGGAACTCCAGCTTGGCTGGAATCTGCTACGCAGGACCTGATGCAGACG
CCATGGAGGCATACTACTTACAGGTTTGCTCTCTCATAGCTTGTTCAGCC
TGCTCTCTTATAGGACCCAGGACCACCAGCCTAGGGATGGCACCGCCCAC
AATGGGCTAGAACCTCCCTCATCAATCACTAATTACGATACTGTCTCCAC
AAGCTTGCCTACAGACCGATCTTATGGAGGCGTTTTCTCAATTGAGCTTC
TCTCCTCTCAGATGACTCTAGCTTGTGCCACGTTGACATACAGCTGTCCA
GCACAAGTTCCAGAACAAGCACCCGCCCAGATACTGCCGCTCTCCATGAG
GGTGTCTACTAGGACTACGACTTACCGGTGTCCTAGCAATGATTCCAGGG
TTATGTCGGCTAGGTAGATGGCTAACCAGTTAGAGCCCACTGCCCCAGAT
GCGTGAGCCCTGTCCCGCCTTACTCCCATTGCTCACCGTTTGAGACCCCA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCTGGAGCTCTGCCACCTGCAG
CCCTCAGGGCTTGGTGTCACTGGCCGGGTGTGTGGACTCCAGCAGACCTT
AGGATAGAGCTGCTGACTCAGCCCTGCAGGCTGTGGCCGCTTGCCATGCT
CAGCTCAGCGTCTGCTCACCTGGAGTGTCTGGGGCACGTGATGACAGAAC
AGGACCCGGTGGCCACTGGACCTTACTGACAGAGGAGGAAATGGAAGCCA
GGAAAGAGAGGCCCACAGTCACATGTCCTACAGGTGCAGGGTCAGCATCT
GTTCCCTTGCTGGGCCCCAGGAAGGCGAAGCAGTGTTGACAGCCATCCCT
GGCCGAGGCTCAGACCGTGAGGCGTAGAACTGTGTCTACAACCCGGCTTG
CTGAACTTACCATCGTGACCAGAAAAAGGTTTAATGTAGGGGACATGGGA
CTGGCCGGAGCCTGCAGGAGGAACAGATGGACCGGCCAGGAAGGTGCCTC
TCCTTCTATAGGCTGGGCACCCAAGGCACAAGAGTTTAGCACCCTAGCGC
CTACTCCCCCTGCCGAGGACATAACCCCCCCCCCCCTACCTGGGTACTCA
CCCATGCTGACAACCCTGACTCCTTAGCCACCTACCTGCGTCCCCCCCAT
CGTGAATGACCTGACCCCCTATCCCCCTTTATTGGCTTCCTCGCAATGCC
GATGGCCCACGAGGCCCTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_j01.g1 MSMg01no155_j01.g1 CHROMAT_FILE:
MSMg01no155_j01.g1 PHD_FILE: MSMg01no155_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:30 2005
         (254 letters)



>mm_chr11_118509731_118510384
          Length = 654

 Score =  414 bits (214), Expect = e-120
 Identities = 244/254 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggagctctgccacctgcagccctcagggcttggtgtcactggccgggtgtgtggactcc 60
           |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 201 tggagctctgccacctgcagccctcagggcttggtgtcgctggcagggtgtgtggactcc 260

                                                                       
Query: 61  agcagaccttaggatagagctgctgactcagccctgcaggctgtggccgcttgccatgct 120
           |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
Sbjct: 261 agcagaccttaggatagagctgctgactcagccctgcaggttgtggccacttgccatggt 320

                                                                       
Query: 121 cagctcagcgtctgctcacctggagtgtctggggcacgtgatgacagaacaggacccggt 180
           |||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct: 321 cagctcagcgtctgctcagctggagtggctggggcaggtgatgacagaacaggacccggt 380

                                                                       
Query: 181 ggccactggaccttactgacagaggaggaaatggaagccaggaaagagaggcccacagtc 240
           ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 ggccactggaccttagtgacagaggaggaaatggaagccaggacagagaggcccacagtc 440

                         
Query: 241 acatgtcctacagg 254
           ||||||||||||||
Sbjct: 441 acatgtcctacagg 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)