BAC Information

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BAC

Clone NameMSMg01-155K05
Chromosome11 (Build37)
Map Location 109,643,890 - 109,644,255
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc46, LOC629945, Axin2, E030025P04Rik, LOC194985, Rgs9, 1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6, Arsg, Wipi1, Prkar1a, BC029169
Downstream gene1700012B07Rik, 1700023C21Rik, LOC100041492, Abca8b, Abca8a, Abca9, Abca6, Abca5, Map2k6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155K05.T7 (MSMg01no155_k05.b1)MSMg01-155K05.TJ (MSMg01no155_k05.g1)
ACCAG356593AG356594
length733782
length of high quality
(start - end)
454 (47 - 500)222 (74 - 295)
definitionCHROMAT_FILE: MSMg01no155_k05.b1 PHD_FILE: MSMg01no155_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:35 2005CHROMAT_FILE: MSMg01no155_k05.g1 PHD_FILE: MSMg01no155_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCC
GCGGAATTCCTACTGAATTCCCAGCTCCTCAGCTTCAAGGATTTTCTGGG
ACATTGGATCACTGGTGGAAGCTTACCTATGTCAGAATTCAATCTTTAAA
GGCACTTATAATAAAACAATACTGAAAGAGTGCATACACCATACTAACTC
GGAGATAGGGTATGAGTATACGGGTTATGAGAATGCCAAGGTTCCAGGAT
ACTGTTTCCTTGAAACTCTTTGCCTCATGAGTGCTTCCAGGCCTCTCGGC
CTGCTAAGCAGACTTCACTGGAGTGCCTGTAGCATGCAGGCATGTGTGTA
TGCATGCATGGAAGGTAAGTTGACATATTCAAGGAAAAGTACATTGCTCC
CAATGCTTGATGCAAAAGGTAAACATATTTCTTGATTATTGATTAAAAAT
ATAGAACAAAAGAAGTTGGGCCGCGGATATAGCTCAGTTAACAGAGTGTT
TGCAGTACCTGTGTGAAGTCCTAAGTCTAATCCCCAGCTCAACTAGAACT
AAGCATTATGGTACACTCCTATGGAAGCATGAGGATCAAAGAAATTTCAT
GTCACAATGTTATCTTTGCTTTAATTTATTAAACACCCCCCGATCTCTCT
CATATTTATTACAACGCTCTACCTATATTTATATTCCCCCTTTTTTACTG
ACCTATTACCCTTGTAACCTTTTCCACCATTTA
TCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCTGAAAATCCAGGGATGGATCTCCTGTCTCTGCTTC
TTGAGCCACAGGGTTACAGGTGCACTATTGAGCCAACCCAGCATTTAAAT
GGGAGCTGAGGCTAAAAAAAATCTGGTTGCCACTCTTGTGGGGCAAGCAC
TTTACCCACGGAGCCATCTCCCCAGCCAATATCCTTTAAAAAGAAAGATT
ATTATTATTATTATTATTATTATTATTATTATTATTATTTTATTTCTAGG
TGTATGCGTCCCTTCTTCCCTTTTTTTCTTTTCCACCTTCCCCCTTTCCC
CCCCCTTACTCCCACTTTTCAATCTTTAACAACATTTACCCTTCTTCCTT
ATCCTTTACTCCCCTTTCCTTAATTCCTCATCTTACCTTATATCCCTTTT
TTCATCCCTTCCTCCTACCCCCCTCCTTCTTTCTCCCCTTCTTCCCTTAT
CCCCCCCATCCTTTTTTCACCCTTTCTTTCCCCTTTTAAACCACCTTTTT
CCCACCCCATTTACCATTACCCCTTTTCCCTCTTTTTTTCCTACTTTTTT
CCTTCTCCCCCCATTTTCCCCTTTTCATTACCCATTTTTCCCATTTTTCC
CCCTTACCCCCTTTTCCGTTTCCCCTCATTTTACCTTTTTCCCCCTTTTC
CCCCTTTTTTATCCCTTTCCCATTTTCCCTTTTTTCCCCACCTTTTTCCC
TTTTCCCTCCCCAACATCCCCCCATTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_k05.b1 MSMg01no155_k05.b1 CHROMAT_FILE:
MSMg01no155_k05.b1 PHD_FILE: MSMg01no155_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:35 2005
         (454 letters)



>mm_chr11_109643402_109644255
          Length = 854

 Score =  677 bits (350), Expect = 0.0
 Identities = 362/366 (98%)
 Strand = Plus / Minus

                                                                       
Query: 89  gaattcaatctttaaaggcacttataataaaacaatactgaaagagtgcatacaccatac 148
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 854 gaattcaatctttaaaggcacttataataaaacaatactgaaagagagcatacaccatac 795

                                                                       
Query: 149 taactcggagatagggtatgagtatacgggttatgagaatgccaaggttccaggatactg 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 taactcggagatagggtatgagtatacgggttatgagaatgccaaggttccaggatactg 735

                                                                       
Query: 209 tttccttgaaactctttgcctcatgagtgcttccaggcctctcggcctgctaagcagact 268
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 734 tttccttgaaactctttgcctcatgagtgcttccaggcctcttggcctgctaagcagact 675

                                                                       
Query: 269 tcactggagtgcctgtagcatgcaggcatgtgtgtatgcatgcatggaaggtaagttgac 328
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 674 tcactggagtgcctgtagcatgcaagcatgtgtgtatgcatgcatggaaggtaagttgac 615

                                                                       
Query: 329 atattcaaggaaaagtacattgctcccaatgcttgatgcaaaaggtaaacatatttcttg 388
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 atattcaaggaaaagtacattgctcccaatgcttgatgcaaaaggtaaacatatttcttg 555

                                                                       
Query: 389 attattgattaaaaatatagaacaaaagaagttgggccgcggatatagctcagttaacag 448
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 554 attattgattaaaaatatagaacaaaagaagttgggccggggatatagctcagttaacag 495

                 
Query: 449 agtgtt 454
           ||||||
Sbjct: 494 agtgtt 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)