BAC Information

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BAC

Clone NameMSMg01-155O13
Chromosome11 (Build37)
Map Location 10,791,548 - 10,792,016
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382483
Downstream geneVwc2, Zpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1, Fignl1, Ddc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155O13.T7 (MSMg01no155_o13.b1)MSMg01-155O13.TJ (MSMg01no155_o13.g1)
ACCAG356791AG356792
length738825
length of high quality
(start - end)		464 (46 - 509)241 (76 - 316)
definitionCHROMAT_FILE: MSMg01no155_o13.b1 PHD_FILE: MSMg01no155_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:55 2005CHROMAT_FILE: MSMg01no155_o13.g1 PHD_FILE: MSMg01no155_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGAGCAATCCTTGGGAAAGCTAGTCTTTGTTAACAAGCTTGGTA
ACATGAAAACATTTCCTCTTGGAATGATGTGGGCACTCTGGCTTCCTGGA
CATTTTCTGTGGAATAATGACAGAGATCAAGTCCCCAGGTGACATTTAAA
GCTCCAAATTTTAACCAGTCTTTTGTTTCTTCTGAAGATTACTCCCAGTG
AAAATTCCTTCAATTTCTCTAAGATACTATTTCTGCCCCATATTGGAAAT
ATGCTAGTTTGTCATGGCATTTCTTTTCTTGTAGCACTGTGGATGTTAAT
TATGTTCTTTATGTGATAGTTTGCTTATAAATTTATATATTTGAATGCTT
GCTCCCTAGGTGGTGGAATTGTTTGGGAAGGATTAAGAGTTGAGGCCTTA
AAGGAGGTGTGTCACTGGAAATTAACTTTGAGGCTTCAAAAGCACATAAC
ATCCATTCCCAGGCGGTTGTTTCTTGGCCTAACATGTTGCCTCTCTCAAC
ATGGAAGCTCGCTACTATTGATTCACCCTCATGTCAGTCAAATTGCCGCC
ATGTTCCCCGCCATGATGTGTATGAAGCTTTTCTCTCAAACTACAATTTG
ATCCTTCCCTTATCCTTTCTCCTTTTCTCAGTTATTTTCGATTCACCTTT
TTTCTTGCACTTTTATCTTATTATCTTACCCTCTTTTT

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACAGTATATTCATAGGTTCAAGTCA
AACAGAGTCCTAGCATTGCAAAGCAAAATGGACACAAGATCTCAACCCAA
ATAATACTCATTTGCAAATGGAATATTAATTTTGTAAAATGAAGCTTACT
GGGTATATCAAAATCACTCCAGGGCAGTCCTTGTGCCCAGCAGTTGACCA
ACACAAAATGAACTCCATAGTGGTTTTCTTTGATTTTTGTTTTGTGGGTT
TTGTTTTTTTTTGGCTGTTTGTCTCTTTCCCCCCTACCCCCCTTCCCCCT
TCCCCTCCCTTACTCTTCTTTTCCTTCTTTTTTTCCTTTTTTCCCCTTTC
TTCCTTTTTCCCTTCTTCCCCCCCCCCCTAATTTCTTTCATCCTTCCCAT
TTTATCCCTTCTTTTTCCTCCCTTTCCATCCTCCCCCCCCCTTACCTTTC
TTTCCTCCCCCTTACCTCACCTTTTTCCCCCCCCTCCCTTTTATTTCCCC
CTCTTCTTTTCCCCTTTTTATTTCTCCCTTTTTTCCCCCACCCCTTTATC
CCTATACCTCCTTTTACCACCCTTTTTTCCCCCATTTTTTCCTTCTATCC
CCCTTTTCCCCATTTACTTTTCCCATTTTTTCCCTATTATTACACTTTCC
CCCATAATCCTATCCCCCCCTTTTTTCTATTTTTCCCCTTTTCCCCCTTT
TTTTTCCCTTTCCCTTTTTTCCCTTTTCTCCAACCCTTTTTCATTTTCCC
TCTCGCACATCCCCCCCTTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_o13.b1 MSMg01no155_o13.b1 CHROMAT_FILE:
MSMg01no155_o13.b1 PHD_FILE: MSMg01no155_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:55 2005
         (464 letters)



>mm_chr11_10791366_10792229
          Length = 864

 Score =  857 bits (443), Expect = 0.0
 Identities = 459/469 (97%), Gaps = 8/469 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccagagcaatccttgggaaagctagtctttgttaacaagcttggtaacatgaaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ggaattccagagcaatccttgggaaagctagtctttgttaacaagcttggtaacatgaaa 592

                                                                       
Query: 64  acatttcctcttggaatgatgtgggcactctggcttcctggacattttctgtgga----- 118
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 591 acatttcctcttggaatgatgtgggcactctggcttcctggacattttctgtggaataag 532

                                                                       
Query: 119 ---ataatgacagagatcaagtccccaggtgacatttaaagctccaaattttaaccagtc 175
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gggataatgacagagatcaagtccccaggtgacatttaaagctccaaattttaaccagtc 472

                                                                       
Query: 176 ttttgtttcttctgaagattactcccagtgaaaattccttcaatttctctaagatactat 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ttttgtttcttctgaagattactcccagtgaaaattccttcaatttctctaagatactat 412

                                                                       
Query: 236 ttctgccccatattggaaatatgctagtttgtcatggcatttcttttcttgtagcactgt 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ttctgccccatattggaaatatgctagtttgtcatggcatttcttttcttgtagcactgt 352

                                                                       
Query: 296 ggatgttaattatgttctttatgtgatagtttgcttataaatttatatatttgaatgctt 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ggatgttaattatgttctttatgtgatagtttgcttataaatttatatatttgaatgctt 292

                                                                       
Query: 356 gctccctaggtggtggaattgtttgggaaggattaagagttgaggccttaaaggaggtgt 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gctccctaggtggtggaattgtttgggaaggattaagagttgaggccttaaaggaggtgt 232

                                                            
Query: 416 gtcactggaaattaactttgaggcttcaaaagcacataacatccattcc 464
           ||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 231 gtcactggaaattaactttgaggtttcaaaagcgcataacatccattcc 183


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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