BAC Information

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BAC

Clone NameMSMg01-155P13
Chromosome11 (Build37)
Map Location 11,100,084 - 11,100,488
singlet/doubletsinglet
Overlap geneVwc2
Upstream geneLOC382483
Downstream geneZpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1, Fignl1, Ddc, Grb10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155P13.T7 (MSMg01no155_p13.b1)MSMg01-155P13.TJ (MSMg01no155_p13.g1)
ACCAG356831AG356832
length744759
length of high quality
(start - end)
405 (75 - 479)445 (77 - 521)
definitionCHROMAT_FILE: MSMg01no155_p13.b1 PHD_FILE: MSMg01no155_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:59 2005CHROMAT_FILE: MSMg01no155_p13.g1 PHD_FILE: MSMg01no155_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXCTTCGGACGTGGACCGNGGAA
TTCCGTTGTAACGCCCGACCGCTTGATAAACCTTGTTCAGATCCAAGTCA
CTTTTTCAATGGTAAAGTCTGGAATTCAAAGGTGTGATCTGGCAATCTGG
GGGTGCCTTTTAGAACATGATAGCTGTAGAGTTGACCTTGTACTATGAGG
ACAGTATTGTTTCAACCTAATGAACATTCTAATAGATTCTAGGCTAATAG
GATTCAGTAATGAGGGAAGCCTACAATTTTCCAAAATAGCCTAATTTTCA
AAACAGTACTCTTTGATCTTTTTGCATGGGTGCTCTGATTAGCTGCACAA
CATTGTGTATGTTATGTGAGCCTTGGGGCAAACTTCAAGGTTGACTTGAT
GCAATTCATTGGCGCGTTTCTTTGTCCTCTATTCATTATTCCCTGTGGCT
AATTCATTCCCGGGAGACTCTGTGGTAATCAAATGGCATATGGACAATGA
ATCTGGGTGGAGAGGTTTCCCAACCAATTTTGAACAACCCCCTGATCACT
GTACCCCCGAGCCCGTACTACTACCACTACTTCTGCTTCCCCCCGCGCCC
TCGCCCCCCCCTATTCCCCTTCCTACCATAACTTCGCCCCTTTCCTACAC
ACTCCTCTTTTTTCTTTTCTCAATATCCACCCCCCACCCCCCCCTATTCC
TTTCTTACCCTTCCCGCCTCACCTGTCCCCCCCCCCCTCCATTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATAAAATTATTAATTCATCTAAA
TAGCATTATTTCAAGAATGTTTATTTTGATGTTGATCTGCAGGAAACTTG
CCAAACAGAGTGTGTTATCACCCAGGAAGTATCACACCAGGCTATAGATA
GTGAGGGTCCCCTGATGCTCAGTCATACCACAACAGGTATATGAGGAATA
TAGGAATAACATGCATGTGAAGGCATATCAGCAGTAAGAAGCAACCCTGG
GATGAAGCCTCTGGGGCCCTGCCTCTCCAGGGTATACCCATTGCAGCAGA
TCAAAACAGTGGGCCATCTCCAGTAATCTCACTTGCCCACTACAGATCTT
CCTGCATTCCATCTCCAACCAAGTTGGGGGCTGGATTTGTGGTAGCAAGT
GTCACCTTTGGTCAAGCATGTGGTCTCCACCTGTATTGGGGGTGGGACAT
GGTGATGAGTAATAGAGGGAGGATTGCCGNCTNTCCCCCCTTTTCTTTCC
CCCCCTCCCCCTCCCCCCTCCTCTCTCCTCCCCTCTCGCTCCTCCCCCCC
CCTTCTATTCTCTCCCCTCCTCTCCCCTCTTTACCCCCTCCCCCCCCCCC
CCTTCTTCCCCCCTTTTTCCTTCTCCCATTCTCCTCCACCCTCACCTCAT
CCCCCTGTCGCCCCTTTCCTCTTACCCCCTCTTCTCCTCGTTACCATCTT
CTTCATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_p13.b1 MSMg01no155_p13.b1 CHROMAT_FILE:
MSMg01no155_p13.b1 PHD_FILE: MSMg01no155_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:59 2005
         (405 letters)



>mm_chr11_11099884_11100688
          Length = 805

 Score =  721 bits (373), Expect = 0.0
 Identities = 397/405 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gataaaccttgttcagatccaagtcactttttcaatggtaaagtctggaattcaaaggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gataaaccttgttcagatccaagtcactttttcaatggtaaagtctggaattcaaaggtg 260

                                                                       
Query: 61  tgatctggcaatctgggggtgccttttagaacatgatagctgtagagttgaccttgtact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatctggcaatctgggggtgccttttagaacatgatagctgtagagttgaccttgtact 320

                                                                       
Query: 121 atgaggacagtattgtttcaacctaatgaacattctaatagattctaggctaataggatt 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaggacagtattgtttgaacctaatgaacattctaatagattctaggctaataggatt 380

                                                                       
Query: 181 cagtaatgagggaagcctacaattttccaaaatagcctaattttcaaaacagtactcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtaatgagggaagcctacaattttccaaaatagcctaattttcaaaacagtactcttt 440

                                                                       
Query: 241 gatctttttgcatgggtgctctgattagctgcacaacattgtgtatgttatgtgagcctt 300
           || || |  |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 gacctgtgagcatgggtgctctgattagctgcacaacattgtgtaggttatgtgagcctt 500

                                                                       
Query: 301 ggggcaaacttcaaggttgacttgatgcaattcattggcgcgtttctttgtcctctattc 360
           |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 501 ggggcaaacttcaaggttgacttgatgcaattcattggtgtgtttctttgtcctctattc 560

                                                        
Query: 361 attattccctgtggctaattcattcccgggagactctgtggtaat 405
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attattccctgtggctaattcattcccgggagactctgtggtaat 605


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)