BAC Information

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BAC

Clone NameMSMg01-157C09
Chromosome11 (Build37)
Map Location 72,721,725 - 72,722,418
singlet/doubletsinglet
Overlap geneZzef1
Upstream geneAipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, LOC627119
Downstream geneAtp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157C09.T7 (MSMg01no157_c09.b1)MSMg01-157C09.TJ (MSMg01no157_c09.g1)
ACCAG357706AG357707
length733728
length of high quality
(start - end)		698 (36 - 733)290 (63 - 352)
definitionCHROMAT_FILE: MSMg01no157_c09.b1 PHD_FILE: MSMg01no157_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:26 2005CHROMAT_FILE: MSMg01no157_c09.g1 PHD_FILE: MSMg01no157_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACTA
AGATACCTCTAAGGCCTCAGAGGAGTAACAATAAAGTGAAATTATAGACT
GAAATCCTACATAAGGTAAACATGAGTGTGGCCGTATTACAAACTGATTT
TAGCTCAAAGGAATTTTGGAGGGAAATAGTAATTCAAAAGCACATTTTAC
TATCATGGTATAATGGCCTATTATGTGTTTCTACAAAATACTCCTCCAAG
GTTCTTTGAACAAACACCCAATTCATTTTCCTGGCAGGGGAGGACAGGTG
TCAGGATCCCTGATTCAGGAAGGCAGAACCAAGGTTGGGTTTCAAAGCTG
CCCAGAATTAGAATACTCCGGATGGAACTGGTTGGAACAAGCTAGCTCTG
CTTCTGGGCTCAGCTTTACAGGAAGCCCTCCCTCCTCATTACCTCTAGGT
CTCGGAGGAGCCAGGTTTTACTGAAGCCGGTCCCTTTGCTGCACTTCTTC
ACCAGCAGCTTTAGCAGATCGGTCTGGAGGAAGGTGGCATGGGTCTCTTC
AAAACCGTGAGCCTGCCAAGCCAAGGGAGAGATTTGCAGCTGCTATAGAG
TGATGGTTAAGGTTGGACAGAGCAACAGCCTTTCTCAGAGCCCAGTCTCA
GCTGATGGCCCAACTCAGCTTCCAACAGAAATAAATGCTTGTCAGTAAGA
AAGTACTCCACATCTTAACCATGAGCCATTGCT

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGTGGACTGTATCTTGTGTATTCTGTATGGGTTTTTTT
CTTTGGCTAATATCCACTTATTAGTGAGTACATACCATGCATGTCCTTTT
GGGTCTGAGTTACTTCACTCAGGATGATATTTTCTAGTTCCATCCATTTG
CCCGCAAAAGTCAGGATGTCCTCATTCTTAATAGCTGAGTAGTATTCCAT
TGTGTAAATGAACCACATTTTCTGTATCCATTCTTCTGTTGTGGGACATC
TAGGTTGTTTCCATCTTCTGGCTATCACAAATAAAGCCATTATGACAGTG
TAACATGCGCTCCGCGCCATGGTGGGGCATCTTTTGGGTATATTCCCAAG
AGTGGTATAGCTGGGTCTTTAGGTAGATAGATCTATTTCCAATTTTCTGA
GGAACCACGAGATTGATTTCCAGAGTGGTTGTACCAGTTTGCAATCCCAC
CAGCAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCTCCAGCATATGTT
ATCACCAGAGGTTGTGATCTTAGCCATTCTGACTGGTGTAACGTGGACTC
TCAGGGTCGTTTTGATTTGCATTTCTCTGATCACTAAGGACTTTGAACAT
TTCTTTAGGTGTTTCTCAGCCATTTGAGTTTCCTCAGTTGTGAATTCTCA
GGTTAGTCTGTACCCCATTTCTTGATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_c09.b1 MSMg01no157_c09.b1 CHROMAT_FILE:
MSMg01no157_c09.b1 PHD_FILE: MSMg01no157_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:26 2005
         (698 letters)



>mm_chr11_72721521_72722618
          Length = 1098

 Score = 1280 bits (662), Expect = 0.0
 Identities = 686/694 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccactaagatacctctaaggcctcagaggagtaacaataaagtgaaattatagac 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 gaattccactaagaaacatctaaggcctcagaggagtaacaataaagtgaaattatagac 839

                                                                       
Query: 65  tgaaatcctacataaggtaaacatgagtgtggccgtattacaaactgattttagctcaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 tgaaatcctacataaggtaaacatgagtgtggccgtattacaaactgattttagctcaaa 779

                                                                       
Query: 125 ggaattttggagggaaatagtaattcaaaagcacattttactatcatggtataatggcct 184
           ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 778 ggaattttggagggaaacagtaattcaaaagcacattttactatcatgctataatggcct 719

                                                                       
Query: 185 attatgtgtttctacaaaatactcctccaaggttctttgaacaaacacccaattcatttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 attatgtgtttctacaaaatactcctccaaggttctttgaacaaacacccaattcatttt 659

                                                                       
Query: 245 cctggcaggggaggacaggtgtcaggatccctgattcaggaaggcagaaccaaggttggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cctggcaggggaggacaggtgtcaggatccctgattcaggaaggcagaaccaaggttggg 599

                                                                       
Query: 305 tttcaaagctgcccagaattagaatactccggatggaactggttggaacaagctagctct 364
           ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 598 tttcaaagctgcccagaattagaatacacgggatggaactggttggaacaagctagctct 539

                                                                       
Query: 365 gcttctgggctcagctttacaggaagccctccctcctcattacctctaggtctcggagga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gcttctgggctcagctttacaggaagccctccctcctcattacctctaggtctcggagga 479

                                                                       
Query: 425 gccaggttttactgaagccggtccctttgctgcacttcttcaccagcagctttagcagat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gccaggttttactgaagccggtccctttgctgcacttcttcaccagcagctttagcagat 419

                                                                       
Query: 485 cggtctggaggaaggtggcatgggtctcttcaaaaccgtgagcctgccaagccaagggag 544
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 418 cggtctggaggaaggtggcatgggtctcttcaaaaccatgagcctgccaagccaagggag 359

                                                                       
Query: 545 agatttgcagctgctatagagtgatggttaaggttggacagagcaacagcctttctcaga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 agatttgcagctgctatagagtgatggttaaggttggacagagcaacagcctttctcaga 299

                                                                       
Query: 605 gcccagtctcagctgatggcccaactcagcttccaacagaaataaatgcttgtcagtaag 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gcccagtctcagctgatggcccaactcagcttccaacagaaataaatgcttgtcagtaag 239

                                             
Query: 665 aaagtactccacatcttaaccatgagccattgct 698
           ||||||||||||||||||||||||| ||||||||
Sbjct: 238 aaagtactccacatcttaaccatgaaccattgct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space:   748544
Effective search space used:   748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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