BAC Information

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BAC

Clone NameMSMg01-157J13
Chromosome11 (Build37)
Map Location 30,035,393 - 30,035,679
singlet/doubletsinglet
Overlap geneSpnb2
Upstream genePnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik
Downstream geneEG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470, LOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157J13.T7 (MSMg01no157_j13.b1)MSMg01-157J13.TJ (MSMg01no157_j13.g1)
ACCAG358036AG358037
length728727
length of high quality
(start - end)
321 (372 - 692)289 (68 - 356)
definitionCHROMAT_FILE: MSMg01no157_j13.b1 PHD_FILE: MSMg01no157_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:58 2005CHROMAT_FILE: MSMg01no157_j13.g1 PHD_FILE: MSMg01no157_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
AGGTACCATAACAGGGTTCCAGATCTTAGTAGGGCCTGAGACCTTAGCAT
AACTGACTCCATGATGCAAGTTCCATTCAGGCTGTAAAACTCAGCACGTA
GACAGCACCACCTGCCAGAACTAAAACAAAGGCCTAATCCAGCAAAGTCC
ATAGTTACAGTAAAGTCTCTAAATGGTTAAACTTGCCTTTTTGGCTTTTG
TAGGTCAGCTTCTGGCTAACTGAAATATGTCAACTTAGAACATGGTTGTT
ATGCTTACAAGCTCACCCTAAGAAAGGCTCTGAGCTACACTAGGATCCAG
AACTCTTTTTGTCATCACCACCCAGCTAACAAAGACTTTCTGTTGGCTTA
AACATATATCTAAGCAGTCTTCTCTGGTGAATACCCCCACAGCATTTCTG
GAGACCCCAGTGAGATTCCAGAGAACAGACTTCAAGACACAGGGGGGTCT
CAGAGACCCCTGGAGTAAGGAAGAATCTAGTGGTCAAGGAACTCCTAGGG
GTGGGCAGCCTGAGATATTTTGGGCCCCCATGACTCCCTTTGATCAATCA
CTGATTAACACTTCACAGGGACTGACATCTGTAAGTCGCCTAGTCTGTTA
CCTCTGGACATAAGTTTAGTTAAGGTGCTTTCTGTTTGCATGTCACCTCT
GGACATAAGTTTAGTTAAGGTGCCTTTT
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCATGGTGGCTCACTTGAGGGGACCTTGAAAGC
CAGAGTTTTCCTGGCCCAGGCCATATTCTCCTTCATCCATGTGACATTCT
TCAGGCACCTGTAAGGAGAAAGGAAAGAAGGAAGGTGAGACTTGCTTGTC
CTGAGCACTGAAGAAAGCTATAGAGAGACAGCATCTGCCCTTTATTAGAA
AATGGACATAGCTGGTGCTGTCATATGCTCTACCTGCACACCCTAAGATG
ATAGAAAAAGACATTTTCTCCTAGTCTAGGGCATTCTCCAGGATTAGACA
GTTGTTTTTCATCCCCCCCCCTTCCTCTTCTCTCCTAAGAGCTTGTCTCC
CTAGTTTTTAAAGGTCTGTGTTTTCTGTATCTGAGTCCTGCCCTGTACTG
GTTAAAGTACAGAGGAGGCCTGAGCAGTCCAGTGTTGAGCTGCACTGATG
AGAGTCATTGTGGGCTGGTCATGTAGACAGTCATTAGCCTCTGTTGTAAC
AGTTCCCTTTTGCCTGCAGTTTAGACTGAATTTAAGGTCTTCATGAGAGT
GATATCAGGGCTTTTCATCTGTCTTTATGCAGTTCAAAGAGCTGCTTACT
GCCACAGTGTCTTGCTTTCAGCATCCCAAAGGCTCTCCTGGGAATTCTAC
TCAAAAATAAGACAAGTTACAGAGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_j13.g1 MSMg01no157_j13.g1 CHROMAT_FILE:
MSMg01no157_j13.g1 PHD_FILE: MSMg01no157_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:58 2005
         (289 letters)



>mm_chr11_30035193_30035881
          Length = 689

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatggtggctcacttgaggggaccttgaaagccagagttttcctggcccaggccatatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tcatggtggctcacttgaggggaccttgaaagccagagttttcctggcccaggccatatt 428

                                                                       
Query: 61  ctccttcatccatgtgacattcttcaggcacctgtaaggagaaaggaaagaaggaaggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ctccttcatccatgtgacattcttcaggcacctgtaaggagaaaggaaagaaggaaggtg 368

                                                                       
Query: 121 agacttgcttgtcctgagcactgaagaaagctatagagagacagcatctgccctttatta 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 367 agacttgcttgtcctgagcactgaagaaagctatggagagacagcatctgccctttatta 308

                                                                       
Query: 181 gaaaatggacatagctggtgctgtcatatgctctacctgcacaccctaagatgatagaaa 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aaaaatggacatagctggtgctgtcatatgctctacctgcacaccctaagatgatagaaa 248

                                                          
Query: 241 aagacattttctcctagtctagggcattctccaggattagacagttg 287
           |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aagatattttctcctagtctagggcattctccaggattagacagttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)