BAC Information

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BAC

Clone NameMSMg01-158K08
Chromosome11 (Build37)
Map Location 28,567,123 - 28,567,436
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042377, EG626571, Ccdc85a
Downstream geneEfemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158K08.T7 (MSMg01no158_k08.b1)MSMg01-158K08.TJ (MSMg01no158_k08.g1)
ACCAG358802AG358803
length717707
length of high quality
(start - end)
321 (32 - 352)35 (201 - 235)
definitionCHROMAT_FILE: MSMg01no158_k08.b1 PHD_FILE: MSMg01no158_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:12 2005CHROMAT_FILE: MSMg01no158_k08.g1 PHD_FILE: MSMg01no158_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATTGTTGA
ATAGTTGAGTTATAATCTAGTCTTTGGCTCTTATATACTGCAATAAGCAA
CTTGCATATGTCCTTTGGCAAAGATATAAATGCAGTAGATAAATTCTGGT
ATACTTTTTCCCCAAATTTTGTATTAATCCAGTTTTCACTCTTATTAGCA
TTGTATAAGAGTACTCCCTCTGCACATCCTTGGCCTTTTCCATTTCAGTC
ACCTTGATAGGTATATACTAACTGGATGGTTTGTTTTTTCTAGCATAAGA
ATTTTTAAATTAAAGATGCTTCTAAAAAGTATATATGTGTGGTCTATGTT
CTTCCTTCATCCCCCCCCCCAAATATTTAGACATGTGTGAGAGAGAGAGA
GAGACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTTGTGT
GTTTTATATACAGGAGTTGCTTACATAAGTCATAATACAAATGGACCCCC
TGGAGCTAGAGCTGCAGACTTTGGCTGTGGCACCCTAAAGGATCCTTTAT
CACTACAATATGGATACTCTGTAATAGTACCCGTTCTATTGGGCCTCCTA
GACCTCTCTCTTAGATCCTATGATTCGTAATTTAATTACCGATTTTAAAC
AAAAATTTGAATAACCTTTTTATTCCCTTCCTCGACTTACCGCTAACCCA
CGTGTCCCTCATTCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXACCTCAATAAGTTTTCCCCCATCGGGGCCAAACATTTTTG
GAACAAGGAAACGGAAATAATTCCAAGGGTTTTAAAACCTTCAAAAATAA
AATTAAATATAACCTACTTTCTTCCAGCACCACCTGGCAAGGGAGGGCCT
GGAAACCTCCGGAAAATTTTTTTCCACAAAACCTAAAGTAACAAGGAGTT
AACATAAGAAACAGCCTTCCAAACAGGGAAGGAATTGAGGCAAAAAGGCC
CGGCTGACCGGGTTAAAAAAAAACCAACCCAAAAAAAATCAAAACCAGTT
GTTTTTTTCCACCCCACGCAATAAAAAAAACCCCAACTTTGAATTTTACT
TCACCACCCAGAACCAAATCCCCTAAAATATTTTGGAGTTAAAACGGCAA
AGGAATTCTGAAAGGGGCAAGGTTTCCGGCCCTAATAAATAACCAATTTA
ATTTAAGCCAACGGCATGGAAAATGGAATTTCCTCCAGGCATTCCACAGC
TAAAGGGACTGACAGGTTAATGGTGGATAACACTAACTCGGGCCAAAAGG
CCACCAAGAACACATGGGGCTCCTTAAAAAATGGGTAAAAAAAACCAGAA
TCCGGACACCTGAAAGGAATCCTAATAAATAAATCCCCCCCGGAAACCAT
CCAAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_k08.b1 MSMg01no158_k08.b1 CHROMAT_FILE:
MSMg01no158_k08.b1 PHD_FILE: MSMg01no158_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:12 2005
         (321 letters)



>mm_chr11_28566722_28567442
          Length = 721

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctattgttgaatagttgagttataatctagtctttggctcttatatactgcaata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gaattctattgttgaatagttgagttataatctagtctttggctcttatatactgcaata 656

                                                                       
Query: 65  agcaacttgcatatgtcctttggcaaagatataaatgcagtagataaattctggtatact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 agcaacttgcatatgtcctttggcaaagatataaatgcagtagataaattctggtatact 596

                                                                       
Query: 125 ttttccccaaattttgtattaatccagttttcactcttattagcattgtataagagtact 184
           ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 595 ttttccccaaattttgtgttaatccagttttcactcgtattagcattgtataagagtact 536

                                                                       
Query: 185 ccctctgcacatccttggccttttccatttcagtcaccttgataggtatatactaactgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ccctctgcacatccttggccttttccatttcagtcaccttgataggtatatactaactgg 476

                                                                       
Query: 245 atggtttgttttttctagcataagaatttttaaattaaagatgcttctaaaaagtatata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 atggtttgttttttctagcataagaatttttaaattaaagatgcttctaaaaagtatata 416

                         
Query: 305 tgtgtggtctatgt 318
           ||||||||||||||
Sbjct: 415 tgtgtggtctatgt 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)