BAC Information

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BAC

Clone NameMSMg01-159F01
Chromosome11 (Build37)
Map Location 16,777,541 - 16,777,851
singlet/doubletsinglet
Overlap geneEgfr
Upstream geneLOC665660, Vstm2, Sec61g, Akt2-ps, LOC665689, LOC627583
Downstream gene2810442I21Rik, A630050E13Rik, Plek, 1500041B16Rik, LOC100042644, Ppp3r1, Pno1, AI553587, C1d, LOC382486, EG665748
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159F01.T7 (MSMg01no159_f01.b1)MSMg01-159F01.TJ (MSMg01no159_f01.g1)
ACCAG359287AG359288
length723889
length of high quality
(start - end)
315 (48 - 362)---
definitionCHROMAT_FILE: MSMg01no159_f01.b1 PHD_FILE: MSMg01no159_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:01 2005CHROMAT_FILE: MSMg01no159_f01.g1 PHD_FILE: MSMg01no159_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCGTGTCACCGAGGGACACTGAAATCATCATGTATGAATGGGAA
TCAGAGGCCAGAAGTGATTAAAATATGCAAGACAAGTTCCTTGAAGCCCA
TGTGGGCCAGAGGAGTTCCGGAACACAGCATTGCCTCTGCCAGAGTTCAG
ATTCCTGTTCCAAATCCAGGGGTAGTTGCCAGTTTCAAAAGCTAATCCAA
TGTTTTAAAACCAGAGTTAGGAATAGAAATGTGAAATTCTTCGATGTGTA
TATGTGCATACATGTGTGCATGTGTATTTGGCTATAGTAATTGAAGGATA
ATGTACACACAGAACTATCTGCAGCCACCCTATAATATAAGGAGTACTAC
AACTTGCTTTTAAAATTACCGATATTTAGTAGCCTAGACCATAGAACATA
TGTTATCTTATTCATTGATTTGACCACACATTAAGAGAGGAAGTGGTTTC
TTTGGATAACAGTTTAAGAAGGGATACCGCCCATCACAGTGGTAGAAGCA
AGAGACCAAGTGTTCAAACACGTGAGCCTGCTGGGAATATAATCAAACCA
CACCATCCATTCTGCTGCGCTCCATGCTCCCAGGCCACATAGGATTATGA
GCACTTTATAATGAACAGTATGTTCATTCCATATTCTTAGGTCTTTAACA
GACCACATTATTTATTGATTTTN
CAAAAAAAACGGGAAACCCCGGGGGGCCCCCGGGCCCCACAATTTTTTGG
GGATTACAAAAGGGGCCCGCCGGGTTCTAAAAAAAACTCTCCCAGGGGTC
CCCCAGTTCCCGCGAAAAAATGGGGAGTTTTTTTACCGGGGGTTTTTAAA
GAAAAGGACAAAGAGCTCTCCCTGGGGGTGTCCCCAAAAAAACACAAATT
TTTTTTTTCCTTCTCTGCGCCCCCCCCAAATTCTCCTAAATAATATGGAA
AGGTGGGCGACCAAAGGGCAACTTTGATTTTACCTTGGTGGGGCGAAAAA
TTCCCCTCCTGGCCCCACCAGGCAGCCCCGTTAAAAAACTTTTCTTTCTA
AGGTGGGCCCTGGGGGCAGAAAAAACAATAAACCGCCCTTGGGGGCACAG
GTTTTTTTTTTCTTGAGCCCCTCCCCCCCCCCCCCCATCCACATTCTCTA
AAACTTGAGTGGAACAACCTTTGTGGTACCGGCCTTTTTGGGACCATTCC
CCCCCAGGGGATCTGGAGGTTTATGAAAACCTGGAATTTTTCCGGGGTCT
CGCCAAAAAACGGGAAATTTTTGGTCGTCCCAATTCCCCTCGTACATACT
TATTTTTCCCACACTTTTTTCCTCANTTCCTACATAATTCTGGCCCCACG
TTTTTTAGGATAAGAATAATGCCCCCCCCCCGGTGTCAGGCAGACCTATT
TTTACCTTTTTGCTACTTCCTGGCACAACAGAACGAGAACCCCCCCCGTG
GGGCCCCTATGGGCCCTCAAAACTTTTATACCCCCCGCCACCCAAAATAG
GGGTTTCCTCTAGGGGGGGTGGGACCGCCCCCGTACCACTATTCAGGCGC
AAACATACGGGGCCCCGAATAAAACCCCTCGTATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_f01.b1 MSMg01no159_f01.b1 CHROMAT_FILE:
MSMg01no159_f01.b1 PHD_FILE: MSMg01no159_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:01 2005
         (315 letters)



>mm_chr11_16777337_16778051
          Length = 715

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccgtgtcaccgagggacactgaaatcatcatgtatgaatgggaatcagaggccag 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattccgtgtcactgagggacactgaaatcatcatgtatgaatgggaatcagaggccag 456

                                                                       
Query: 65  aagtgattaaaatatgcaagacaagttccttgaagcccatgtgggccagaggagttccgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aagtgattaaaatatgcaagacaagttccttgaagcccatgtgggccagaggagttccgg 396

                                                                       
Query: 125 aacacagcattgcctctgccagagttcagattcctgttccaaatccaggggtagttgcca 184
           ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 395 aacacagtattgcctctgccagagttcagagtcctgttccaaatccaggggtagttgcca 336

                                                                       
Query: 185 gtttcaaaagctaatccaatgttttaaaaccagagttaggaatagaaatgtgaaattctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gtttcaaaagctaatccaatgttttaaaaccagagttaggaatagaaatgtgaaattctt 276

                                                                       
Query: 245 cgatgtgtatatgtgcatacatgtgtgcatgtgtatttggctatagtaattgaaggataa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 cgatgtgtatatgtgcatacatgtgtgcatgtgtatttggctatagtaattgaaggataa 216

                      
Query: 305 tgtacacacag 315
           |||||||||||
Sbjct: 215 tgtacacacag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)