BAC Information

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BAC

Clone NameMSMg01-159F08
Chromosome11 (Build37)
Map Location 94,765,241 - 94,765,524
singlet/doubletsinglet
Overlap genenone
Upstream geneMbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739
Downstream geneCol1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159F08.T7 (MSMg01no159_f08.b1)MSMg01-159F08.TJ (MSMg01no159_f08.g1)
ACCAG359301AG359302
length845728
length of high quality
(start - end)
195 (46 - 240)287 (78 - 364)
definitionCHROMAT_FILE: MSMg01no159_f08.b1 PHD_FILE: MSMg01no159_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:02 2005CHROMAT_FILE: MSMg01no159_f08.g1 PHD_FILE: MSMg01no159_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCAGCCTGGTCTATAGAGTGAGTTCCAAGCCAGCCAGAACT
ACCTAGAGAAACCTTGTCTTGGAGATCAAGACAAAACAAAACAAAACAAA
ATAAACAACAACAAAAAAAACCAGGAAGTGATTTATCAGCACAGTGCTCA
CACATGTTGTTGTTGTTGTTGTGGTAGTGGTGGTGGTGGTGTNNNNTTTT
ATCACCTATCTACCATTCCATATCTTTTCCCTATCACCACAATCCCCATC
CCAAAACAAAAATATCCCATCTTTTTTTTATAAAGAAACATTCAAAAAAG
AAAGAAAAAATTTTAATGATTCCCCAGGACAAACCCCCAAAAGTTAATAA
ATTATTATNTAAGTATTCTTTTCACCCCCCCCCTAAAAAAAAAAAAAAAA
CACTGTTGGTGGTGGGGGTTCCACTTACACTTATATAATATATCACGTTT
CTTATTCAGACCAATTTTATCCCCTTCCCTCACCTTAGATGATGTCCAAT
AAGCCGATACATATTACTCATAGTATCTTCTTACTATCTACGATCAAAAA
GGAAATCTAATCCATAATATAAACTAAACGCCCCCACTACCTAAATGTCT
TTTTAATATCTTATTATTACACACGCAAAACTTTACAATTATAATCTAAT
AATAATCAGACTATTTTTCACTACTACACAAACAACACAGTACAAGTCTA
CCAATATATACCCTCCACCACTCTCCCCGATATAATCTCTTCTACACCTC
ATCATTAATCCTAAACTTTCCACTATTCTAATTCCCTTCTCACTN
ACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATAAATTGTGATGGAAACAAAT
TTAATAAATAAGAAGGAGAAAATCATTTGGCAAGAAAGAGGACATCAATA
ACAAACACTAGAAATGCAAATGTCACTACAGACATTTGGAATTGCTGTGT
AGATCAGGCTGACCCGGAGCTGGAATACCCACTCCTGCCTCCCAAGTGCT
GGGATTAAAGGTATGAGTCAGCCCACCCAGGCAATAAGTTAGAAATGTTT
GATGAAATGCTAAACTTAAAAAAACAAACAAACAGCCCAGGGATGGTGGC
ACATGCCTTTATTTCTATCTCTCCCGGACGNCCACGCAGGCAGATTTCTG
AGTTGGAGGTCAGCCTGGCCTACAAAAAGAAAACCAGGACAGCCAGGGCT
ACACAGAGAAACCCTGTCTAAAAGCAAACAAACAAACAAATAAACAAACA
TAGCCTACTAACTCTTACAGAAACCACTGTATAGTATTTCATTAGACAAA
GCATGCCCTTAATTTGAAAATCTTCTCTCAAGAAAAATTTCAAGTGCAGA
TGGCGTGACTGCTGAGTTCTTCCAAACATTATTAACTAGCATGAGTTTAC
CCAAATAGAACAGAATGATGGAACGAGGACATTTCCTACCTTTTTGGATG
AGGGCAGCATAACCCCGATATTAGAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_f08.g1 MSMg01no159_f08.g1 CHROMAT_FILE:
MSMg01no159_f08.g1 PHD_FILE: MSMg01no159_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:03 2005
         (287 letters)



>mm_chr11_94765041_94765727
          Length = 687

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataaattgtgatggaaacaaatttaataaataagaaggagaaaatcatttggcaagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataaattgtgatggaaacaaatttaataaataagaaggagaaaatcatttggcaagaaa 260

                                                                       
Query: 61  gaggacatcaataacaaacactagaaatgcaaatgtcactacagacatttggaattgctg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 gaggacatcaataacaaacactagaaatgcaaatgtcactacagacatttggaattactg 320

                                                                       
Query: 121 tgtagatcaggctgacccggagctggaatacccactcctgcctcccaagtgctgggatta 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtagatcaggctgacctggagctggaatacccactcctgcctcccaagtgctgggatta 380

                                                                       
Query: 181 aaggtatgagtcagcccacccaggcaataagttagaaatgtttgatgaaatgctaaactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggtatgagtcagcccacccaggcaataagttagaaatgtttgatgaaatgctaaactt 440

                                                       
Query: 241 aaaaaaacaaacaaacagcccagggatggtggcacatgccttta 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaaaacaaacaaacagcccagggatggtggcacatgccttta 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)